RNA id: TU1287966


Basic Information

Item Value
RNA id TU1287966
length 1939
lncRNA type read_through
GC content 0.47
exon number 3
gene id G1131680
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97976887 ~ 98048479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagagagagagagtgggggggtagagagagagtggatagagagagagagagagtgggggggatagagagagatgtatgTAGGCTTGCCAGGTTGGGAATGactcctatgtgtgtgtGCTGTGTGCGTGTCTGAAATGTCACTCTGTTTTCTATATATAAAGCcccataggctctggtcaaaagtagtgcactatatagggtgtcattggtctctggtcaaaagtagtgcactttatagggaatagggtgccttttcaGACACACAGTGTATCTAGTTGATGCCCTGCACCCAATGTTGAAATAATGTTAGTTGATGGTTTTCATGGGGGGAATCTAGAAGTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTAGCAGTGGAAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGAACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTAGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTGGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTGGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTGGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTGGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTGGCAGTGGGAGGACTTGGGGGAATCTAGAACTCTGGCAGTGGAAGGACTTGGGGGAATCTAGAACTCTGGCAGTGGAAGGACTTGGGGGAATCTAGAATGGGTGGCTATTGTCATCGCTTTCTCACATACTGATTTCATGTGTTATGTTCCAATCAGAGTCAAACACCTTTCTATCCCTTTTATATTAGTGGTTTGTGTCTCATTccatgttttaaatgtatttgtagaTCATTCAGTCTAACAACCATGGTTGTAAAATTCAGGTTGTTTTCCTGGTTGGAGTTCTGGGGAAACTTGGGAAAGTTACCGTCATTCTGAAACCTTACTAACTACAGTGTTCTGTCTATAGATGAACGGTCAGTAAGGTGTTTCTGACACACTGACTAACAACAATCACCATTATAGCTTTACCAGGGTCTGTGTGCGACACAGCCACTGTTTGTAAGTACAGTAACTGTAAGGCGCAGTATGTACGAGAACCCAAACCGTCCGAGACGTTGACTATAGTTTTGCCTTCGGTCATGTGATCATGGCTTATAGAACAGAGGTCCACAGCTCAGGTTTTCATTTGTCCCCTGGCACTAAGTTGATTAAGTAATATCATTGATTGgatagagtacacacacacacacacacacacacacctggtggcCCAGGTCAAAATTAGTCTGTTGTTTAAAGTTAGACTCTGTGAAATGATGTTGCCACGAGCAACACCGCAGATACTAAGATGAGCGAGATGCAAcacttctctctcacacagtcacacacggtATCTGTGCACGTACACGTGTTCACTTCAGAGTGATGTTGCTTCTAGCTTGGTGGCCATGATTTCTTTGTAGAAACAGAatggaaactgtgtgtgtgtagaggcgtGAGGGACAGGAGCTTGCCATTGATTGGTCAGGAGGAGAAGACATACTGTGGTTTGTGTCAATGAGATTTGAGATGAAAAACCAAAACAGGGGACAAGTTGAGCCTCGTGCTTCAATGCTCTTAGTAGTGTAAATTGACCCACTCTGCTGTTTACTGTCTACATCGGCGTGGATGGGTTGAGGGGTCATCGGAGGGAGGCTGTCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1287935 lncRNA downstream 1076 97975008 ~ 97975811 (-) True G1131658
TU1288053 lncRNA downstream 7856 97968424 ~ 97969031 (-) True G1131750
TU1287967 lncRNA downstream 17381 97959174 ~ 97959506 (-) True G1131681
TU1287947 lncRNA downstream 26147 97949990 ~ 97950740 (-) True G1131664
TU1288037 lncRNA downstream 31277 97945313 ~ 97945610 (-) True G1131742
TU1288096 lncRNA upstream 11899 98060378 ~ 98060634 (-) True G1131775
TU1288097 lncRNA upstream 12315 98060794 ~ 98061080 (-) True G1131776
TU1288114 lncRNA upstream 17218 98065697 ~ 98097585 (-) True G1131778
TU1288117 lncRNA upstream 25627 98074106 ~ 98106914 (-) True G1131781
TU1288120 lncRNA upstream 27223 98075702 ~ 98108140 (-) True G1131782
XM_036939425.1 mRNA downstream 2139 97959753 ~ 97974748 (-) False LOC110485313
XM_021559005.2 mRNA downstream 27656 97947278 ~ 97949231 (-) True LOC110487083
XM_036939424.1 mRNA downstream 33016 97917737 ~ 97943871 (-) True LOC110487090
XM_036939423.1 mRNA downstream 33017 97917737 ~ 97943870 (-) False LOC110487090
XM_036939419.1 mRNA downstream 98311 97865654 ~ 97878576 (-) False LOC110487093
XM_036939436.1 mRNA upstream 88595 98137074 ~ 98186289 (-) True LOC110485327
XM_036939439.1 mRNA upstream 181884 98230363 ~ 98259644 (-) False LOC118936513
XM_036939440.1 mRNA upstream 181884 98230363 ~ 98259644 (-) False LOC118936513
XM_036939450.1 mRNA upstream 217576 98266055 ~ 98282686 (-) False LOC110487128
XM_036939448.1 mRNA upstream 217576 98266055 ~ 98283151 (-) False LOC110487128
TU1287948 other downstream 2167 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 116369 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 123294 97852786 ~ 97853593 (-) True G1131720
TU1287960 other downstream 194064 97778655 ~ 97782823 (-) True LOC110538882
TU1287932 other downstream 263771 97712634 ~ 97713116 (-) True G1131656
TU1288159 other upstream 210403 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 334491 98382970 ~ 98383815 (-) True G1131863
TU1288904 other upstream 958148 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 1005025 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 1043237 99091716 ~ 99092238 (-) True LOC110538840

Expression Profile