RNA id: TU1288059



Basic Information


Item Value
RNA id TU1288059
length 258
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1131754
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97989056 ~ 97990474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tatttacctacctacatatttacctacctacatatttacctacctacctatttacctacctatttacttacctacatatttacctacctacctatttacctacctacctatttacctacctgcctacctacctacatatttacctacctacctatttacctacctacatatttacctacctatttacttacctacatatttacctacctacatatttacctacctgcctatttacctacctacatatttacctaccta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1287935 lncRNA downstream 13774 97975008 ~ 97975811 (-) True G1131658
TU1288053 lncRNA downstream 20554 97968424 ~ 97969031 (-) True G1131750
TU1287967 lncRNA downstream 30079 97959174 ~ 97959506 (-) True G1131681
TU1287947 lncRNA downstream 38845 97949990 ~ 97950740 (-) True G1131664
TU1288037 lncRNA downstream 43975 97945313 ~ 97945610 (-) True G1131742
TU1288061 lncRNA upstream 4758 97995232 ~ 97995716 (-) True G1131755
TU1288051 lncRNA upstream 13145 98003619 ~ 98005134 (-) True G1131749
TU1287954 lncRNA upstream 20661 98011135 ~ 98012220 (-) True G1131668
TU1288070 lncRNA upstream 22300 98012774 ~ 98014510 (-) True G1131763
TU1288082 lncRNA upstream 25805 98016279 ~ 98017168 (-) False G1131764
XM_036939425.1 mRNA downstream 14837 97959753 ~ 97974748 (-) False LOC110485313
XM_021559005.2 mRNA downstream 40354 97947278 ~ 97949231 (-) True LOC110487083
XM_036939424.1 mRNA downstream 45714 97917737 ~ 97943871 (-) True LOC110487090
XM_036939423.1 mRNA downstream 45715 97917737 ~ 97943870 (-) False LOC110487090
XM_036939419.1 mRNA downstream 111009 97865654 ~ 97878576 (-) False LOC110487093
XM_036939436.1 mRNA upstream 146600 98137074 ~ 98186289 (-) True LOC110485327
XM_036939439.1 mRNA upstream 239889 98230363 ~ 98259644 (-) False LOC118936513
XM_036939440.1 mRNA upstream 239889 98230363 ~ 98259644 (-) False LOC118936513
XM_036939450.1 mRNA upstream 275581 98266055 ~ 98282686 (-) False LOC110487128
XM_036939448.1 mRNA upstream 275581 98266055 ~ 98283151 (-) False LOC110487128
TU1287948 other downstream 14865 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 129067 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 135992 97852786 ~ 97853593 (-) True G1131720
TU1287960 other downstream 206762 97778655 ~ 97782823 (-) True LOC110538882
TU1287932 other downstream 276469 97712634 ~ 97713116 (-) True G1131656
TU1288159 other upstream 268408 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 392496 98382970 ~ 98383815 (-) True G1131863
TU1288904 other upstream 1016153 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 1063030 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 1101242 99091716 ~ 99092238 (-) True LOC110538840

Expression Profile