RNA id: TU1288061


Basic Information

Item Value
RNA id TU1288061
length 226
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1131755
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97995232 ~ 97995716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGATCCTACAGCAGCAGAAgatctctgttctattctactataactgaccccccccccccccctccctccctcaccaggAGGAGGCTAAGCAGATCCTACAGCAGCAGAAgatctctgttctattctactataaCTGACCCCCTCCCTCcctcaccaggAGGAGGCTAAGCAGATCCTACAGCAGCAGAAgatctctgttctattctactataactgacccccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288060 lncRNA downstream 4758 97989056 ~ 97990474 (-) False G1131754
TU1288059 lncRNA downstream 4758 97989585 ~ 97990474 (-) True G1131754
TU1288058 lncRNA downstream 4885 97986978 ~ 97990347 (-) True G1131753
TU1287935 lncRNA downstream 19421 97975008 ~ 97975811 (-) True G1131658
TU1288053 lncRNA downstream 26201 97968424 ~ 97969031 (-) True G1131750
TU1288051 lncRNA upstream 7903 98003619 ~ 98005134 (-) True G1131749
TU1287954 lncRNA upstream 15419 98011135 ~ 98012220 (-) True G1131668
TU1288070 lncRNA upstream 17058 98012774 ~ 98014510 (-) True G1131763
TU1288082 lncRNA upstream 20563 98016279 ~ 98017168 (-) False G1131764
TU1288083 lncRNA upstream 20563 98016279 ~ 98017228 (-) False G1131764
XM_036939425.1 mRNA downstream 20484 97959753 ~ 97974748 (-) False LOC110485313
XM_021559005.2 mRNA downstream 46001 97947278 ~ 97949231 (-) True LOC110487083
XM_036939424.1 mRNA downstream 51361 97917737 ~ 97943871 (-) True LOC110487090
XM_036939423.1 mRNA downstream 51362 97917737 ~ 97943870 (-) False LOC110487090
XM_036939419.1 mRNA downstream 116656 97865654 ~ 97878576 (-) False LOC110487093
XM_036939436.1 mRNA upstream 141358 98137074 ~ 98186289 (-) True LOC110485327
XM_036939439.1 mRNA upstream 234647 98230363 ~ 98259644 (-) False LOC118936513
XM_036939440.1 mRNA upstream 234647 98230363 ~ 98259644 (-) False LOC118936513
XM_036939450.1 mRNA upstream 270339 98266055 ~ 98282686 (-) False LOC110487128
XM_036939448.1 mRNA upstream 270339 98266055 ~ 98283151 (-) False LOC110487128
TU1287948 other downstream 20512 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 134714 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 141639 97852786 ~ 97853593 (-) True G1131720
TU1287960 other downstream 212409 97778655 ~ 97782823 (-) True LOC110538882
TU1287932 other downstream 282116 97712634 ~ 97713116 (-) True G1131656
TU1288159 other upstream 263166 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 387254 98382970 ~ 98383815 (-) True G1131863
TU1288904 other upstream 1010911 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 1057788 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 1096000 99091716 ~ 99092238 (-) True LOC110538840

Expression Profile