RNA id: TU1287954


Basic Information

Item Value
RNA id TU1287954
length 744
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G1131668
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98011135 ~ 98012220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTTTCTTACCGCGGCAACCATCTCTGTGGGGCTCACATAGAGCACGCTCACTAGAGGGAGGCGGTCCGTTGTCAGCTGAGTCATCCTGTCAATCGACACGAGGTCAGAGATCAAGAGTCATGGGGTCAATGACATGTTCCTCTCTTTGTGTGAATCTCTAAATGAAAGATTCCTCTCATCCCTTTCTCCTAGCCTCTTCCTCAGAACATCAGAAGGACACAAGGTTCCTTTTCAAGGATCTCCTCCAAGGCTCTAATGGCTTCCCTTTTCCATTTTCAGGAGAGGAGGCGAGAGGACGACAGAAGTAGAGGAAAAGACTGAGAAGCACCCTTTCTGTCAGTGATGGCTACTCGCTCTTTCCCCCTTCACTCTTTCCCCCTTCACTCTTTCCCCTTCACTCTTCCCCCCTTCACTCTTTCACCCCttcactctttcacCCCTTCACTCTTTCCCCCCTTCACTCTTTCCCCCCTTCACTCTTTCCCCCTTCACTCTTTCCCCCTTCACTCTTTCCCCCttcactctttcactcactctttcCCCTGGGTGGCGTCGGCCACACTGATGCTGCTGTTGTGAGCGACCCAGGCCAGGTGGTCTCCGCTGGGGGAGAAGGAGACACTGTGTACCCAACCTCCACAGTCCTTGGTCTCCAGCAGCATCTCCCCAAATGGCATCTTAGCCCCCCAAGCTGTCGGGCCTGGCTTGTCCTCGATTTCCTTGATGTAGGCAGAGAAGAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288051 lncRNA downstream 6001 98003619 ~ 98005134 (-) True G1131749
TU1288061 lncRNA downstream 15419 97995232 ~ 97995716 (-) True G1131755
TU1288060 lncRNA downstream 20661 97989056 ~ 97990474 (-) False G1131754
TU1288059 lncRNA downstream 20661 97989585 ~ 97990474 (-) True G1131754
TU1288058 lncRNA downstream 20788 97986978 ~ 97990347 (-) True G1131753
TU1288070 lncRNA upstream 554 98012774 ~ 98014510 (-) True G1131763
TU1288082 lncRNA upstream 4059 98016279 ~ 98017168 (-) False G1131764
TU1288083 lncRNA upstream 4059 98016279 ~ 98017228 (-) False G1131764
TU1288079 lncRNA upstream 4494 98016714 ~ 98017168 (-) True G1131764
TU1288088 lncRNA upstream 11648 98023868 ~ 98024241 (-) True G1131769
XM_036939426.1 mRNA downstream 9542 97979771 ~ 98001593 (-) True LOC110518411
XM_036939429.1 mRNA downstream 9543 97979771 ~ 98001592 (-) False LOC110518411
XM_036939428.1 mRNA downstream 9591 97979771 ~ 98001544 (-) False LOC110518411
XM_036939427.1 mRNA downstream 9698 97979771 ~ 98001437 (-) False LOC110518411
XM_036939425.1 mRNA downstream 36387 97959753 ~ 97974748 (-) False LOC110485313
XM_036939436.1 mRNA upstream 124854 98137074 ~ 98186289 (-) True LOC110485327
XM_036939439.1 mRNA upstream 218143 98230363 ~ 98259644 (-) False LOC118936513
XM_036939440.1 mRNA upstream 218143 98230363 ~ 98259644 (-) False LOC118936513
XM_036939450.1 mRNA upstream 253835 98266055 ~ 98282686 (-) False LOC110487128
XM_036939448.1 mRNA upstream 253835 98266055 ~ 98283151 (-) False LOC110487128
TU1287948 other downstream 36415 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 150617 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 157542 97852786 ~ 97853593 (-) True G1131720
TU1287960 other downstream 228312 97778655 ~ 97782823 (-) True LOC110538882
TU1287932 other downstream 298019 97712634 ~ 97713116 (-) True G1131656
TU1288159 other upstream 246662 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 370750 98382970 ~ 98383815 (-) True G1131863
TU1288904 other upstream 994407 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 1041284 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 1079496 99091716 ~ 99092238 (-) True LOC110538840

Expression Profile