RNA id: TU1288082


Basic Information

Item Value
RNA id TU1288082
length 869
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1131764
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98016279 ~ 98017228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGAAAGCATGTTTATTTTACTCAAAAATATTGATTCATTGATTGAATCCCAGCGCAAAGCAACATGATTTATTGCAAAACATCTTGAAGCTGCAGAAGTGTCTACTGTTCCAGTTGAAAATGAATACACATGATGACACATCTATCTGTGTAAAATAATAGGTCACTTGACAGTGGTGTGACTGtgtgttggggtcaattccagtcaatgcttttcaatgaggaatttaaaaaaaatggaattggaatttggtttactttccgaattgactggaattgaaatggaattgaccccaaccctggtgtgACTAACTGCTTAATGTAGATGTTAATAACAACTGGTAGTGGTGAGTCCCATGGTCATCTGGAGTAATGCTGACCGCACAGATGGCAAGACACAGCCTATGGCTCTAGCATCCTCCATGAACTCAGTGCTGCAGGGaaaacagagagaagaagaaaaacaggTTAATAAATGTCATGTAAACAGAGTAGAACAGCCTGAGTTTTACCCATAatgctctggtcaacagtagtgcactatgctgTGTAATGATATGGGGGGAAAGGTTAGTGTTGGAACAAAGGCAAACACACTATCCAGGATACACTTCCACACTCCGCCCCCAGGGGGCAGCACCAACAGGGTCTAGGTGCTGAGCTAAGCCTTGATAAGCACATCAGGTGCAGCCAATGAAGGTGATTGgcagtctgggagagagagagaggaggacagaagcctCTCAGTCGGATTTTATTGGTTTTTGTTGTGTTAGAAAACCTCTTTAGTTGGGCATATATTTTTGTAGTGTGGTTTCTGTTCATATTTACTTTGTCACCATAAACATATGGATAATTTGCTTAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288070 lncRNA downstream 1769 98012774 ~ 98014510 (-) True G1131763
TU1287954 lncRNA downstream 4059 98011135 ~ 98012220 (-) True G1131668
TU1288051 lncRNA downstream 11145 98003619 ~ 98005134 (-) True G1131749
TU1288061 lncRNA downstream 20563 97995232 ~ 97995716 (-) True G1131755
TU1288060 lncRNA downstream 25805 97989056 ~ 97990474 (-) False G1131754
TU1288088 lncRNA upstream 6700 98023868 ~ 98024241 (-) True G1131769
TU1288095 lncRNA upstream 27807 98044975 ~ 98046197 (-) True G1131774
TU1288096 lncRNA upstream 43210 98060378 ~ 98060634 (-) True G1131775
TU1288097 lncRNA upstream 43626 98060794 ~ 98061080 (-) True G1131776
TU1288114 lncRNA upstream 48529 98065697 ~ 98097585 (-) True G1131778
XM_036939426.1 mRNA downstream 14686 97979771 ~ 98001593 (-) True LOC110518411
XM_036939429.1 mRNA downstream 14687 97979771 ~ 98001592 (-) False LOC110518411
XM_036939428.1 mRNA downstream 14735 97979771 ~ 98001544 (-) False LOC110518411
XM_036939427.1 mRNA downstream 14842 97979771 ~ 98001437 (-) False LOC110518411
XM_036939425.1 mRNA downstream 41531 97959753 ~ 97974748 (-) False LOC110485313
XM_036939436.1 mRNA upstream 119906 98137074 ~ 98186289 (-) True LOC110485327
XM_036939439.1 mRNA upstream 213195 98230363 ~ 98259644 (-) False LOC118936513
XM_036939440.1 mRNA upstream 213195 98230363 ~ 98259644 (-) False LOC118936513
XM_036939450.1 mRNA upstream 248887 98266055 ~ 98282686 (-) False LOC110487128
XM_036939448.1 mRNA upstream 248887 98266055 ~ 98283151 (-) False LOC110487128
TU1287948 other downstream 41559 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 155761 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 162686 97852786 ~ 97853593 (-) True G1131720
TU1287960 other downstream 233456 97778655 ~ 97782823 (-) True LOC110538882
TU1287932 other downstream 303163 97712634 ~ 97713116 (-) True G1131656
TU1288159 other upstream 241714 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 365802 98382970 ~ 98383815 (-) True G1131863
TU1288904 other upstream 989459 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 1036336 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 1074548 99091716 ~ 99092238 (-) True LOC110538840

Expression Profile