RNA id: TU1287882


Basic Information

Item Value
RNA id TU1287882
length 724
lncRNA type intronic
GC content 0.42
exon number 3
gene id G1131621
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98368985 ~ 98370163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcacatgcgccgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacagatgtaggtagacctcacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgagatgctgaatacaacaggtgtagtagaccttacagtgagatgctgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgatgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1287874 lncRNA upstream 6074 98362588 ~ 98362911 (+) True G1131616
TU1287873 lncRNA upstream 6458 98360937 ~ 98362527 (+) False G1131615
TU1287872 lncRNA upstream 6458 98361562 ~ 98362527 (+) True G1131615
TU1287870 lncRNA upstream 10502 98357892 ~ 98358483 (+) True G1131613
TU1287869 lncRNA upstream 11432 98356062 ~ 98357553 (+) True G1131612
TU1288238 lncRNA downstream 25328 98395491 ~ 98396091 (+) True G1131865
TU1288241 lncRNA downstream 31885 98402048 ~ 98402291 (+) True G1131868
TU1288242 lncRNA downstream 34647 98404810 ~ 98405033 (+) True G1131869
TU1288259 lncRNA downstream 46057 98416220 ~ 98416756 (+) True G1131877
TU1288261 lncRNA downstream 57823 98427986 ~ 98428450 (+) True LOC110487124
XM_036939451.1 mRNA upstream 102958 98259570 ~ 98266027 (+) False LOC118936514
XM_036939438.1 mRNA upstream 150700 98187732 ~ 98218285 (+) False LOC110516721
XM_036939437.1 mRNA upstream 150701 98187738 ~ 98218284 (+) True LOC110516721
XM_036939566.1 mRNA upstream 246907 98101643 ~ 98122078 (+) True LOC118937837
XM_036939565.1 mRNA upstream 278612 98065664 ~ 98090373 (+) False LOC110485325
XM_036939460.1 mRNA downstream 55597 98425760 ~ 98561686 (+) False LOC110487124
XM_036939458.1 mRNA downstream 57748 98427911 ~ 98561686 (+) False LOC110487124
XM_036939459.1 mRNA downstream 57749 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA downstream 57751 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA downstream 57751 98427914 ~ 98564239 (+) False LOC110487124
TU1287770 other upstream 102958 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other upstream 102958 98260162 ~ 98266027 (+) False LOC118936514
TU1287587 other upstream 546928 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1205906 97162262 ~ 97163079 (+) True G1130780
TU1286316 other upstream 1667048 96678532 ~ 96701937 (+) True LOC118937804
TU1288518 other downstream 354694 98724857 ~ 98725197 (+) True G1132060
TU1288511 other downstream 393796 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 411976 98782139 ~ 98783327 (+) True G1132082
TU1288564 other downstream 425595 98795758 ~ 98797512 (+) True G1132093
TU1288658 other downstream 604280 98974443 ~ 98974926 (+) True G1132174

Expression Profile