RNA id: TU1288242


Basic Information

Item Value
RNA id TU1288242
length 224
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G1131869
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98404810 ~ 98405033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGGTATCCTACCTGGGTACATACCCGGGATCCTACCTGGGTACATACCTGGGATCCTACCTGGGTACATACCCGGGATCCTACCTGGGATCCTACCTGGGTACATACCTGGGATCCTACCTGGGATCCtacctggttgaccggggtgtCAGCGGTGGAAGTCTCCGATGAgggctgggtccaggatgtctctagcgggaacccagcacctctcctccggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288241 lncRNA upstream 2519 98402048 ~ 98402291 (+) True G1131868
TU1288238 lncRNA upstream 8719 98395491 ~ 98396091 (+) True G1131865
TU1287879 lncRNA upstream 34647 98368985 ~ 98370163 (+) False G1131621
TU1287882 lncRNA upstream 34647 98368985 ~ 98370163 (+) True G1131621
TU1287874 lncRNA upstream 41899 98362588 ~ 98362911 (+) True G1131616
TU1288259 lncRNA downstream 11187 98416220 ~ 98416756 (+) True G1131877
TU1288261 lncRNA downstream 22953 98427986 ~ 98428450 (+) True LOC110487124
TU1288273 lncRNA downstream 55396 98460429 ~ 98462432 (+) False G1131889
TU1288274 lncRNA downstream 55396 98460429 ~ 98462432 (+) False G1131889
TU1288276 lncRNA downstream 55396 98460429 ~ 98462432 (+) False G1131889
XM_036939451.1 mRNA upstream 138783 98259570 ~ 98266027 (+) False LOC118936514
XM_036939438.1 mRNA upstream 186525 98187732 ~ 98218285 (+) False LOC110516721
XM_036939437.1 mRNA upstream 186526 98187738 ~ 98218284 (+) True LOC110516721
XM_036939566.1 mRNA upstream 282732 98101643 ~ 98122078 (+) True LOC118937837
XM_036939565.1 mRNA upstream 314437 98065664 ~ 98090373 (+) False LOC110485325
XM_036939460.1 mRNA downstream 20727 98425760 ~ 98561686 (+) False LOC110487124
XM_036939458.1 mRNA downstream 22878 98427911 ~ 98561686 (+) False LOC110487124
XM_036939459.1 mRNA downstream 22879 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA downstream 22881 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA downstream 22881 98427914 ~ 98564239 (+) False LOC110487124
TU1287770 other upstream 138783 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other upstream 138783 98260162 ~ 98266027 (+) False LOC118936514
TU1287587 other upstream 582753 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1241731 97162262 ~ 97163079 (+) True G1130780
TU1286316 other upstream 1702873 96678532 ~ 96701937 (+) True LOC118937804
TU1288518 other downstream 319824 98724857 ~ 98725197 (+) True G1132060
TU1288511 other downstream 358926 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 377106 98782139 ~ 98783327 (+) True G1132082
TU1288564 other downstream 390725 98795758 ~ 98797512 (+) True G1132093
TU1288658 other downstream 569410 98974443 ~ 98974926 (+) True G1132174

Expression Profile