RNA id: TU1288297



Basic Information


Item Value
RNA id TU1288297
length 207
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1131900
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98489014 ~ 98489787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cccatagccaggtattaaccatctatagacccatctatagacctatagtcaggtattaaccatctatagacccatctatagacccatctatagacgcatctatagacccatagccaggtattaaccatctatagacccatagccagttattaaccatctatagacccatctatagacccatagtcaggtattaaccatctatagacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1288295 lncRNA upstream 5791 98481868 ~ 98483223 (+) True G1131898
TU1288273 lncRNA upstream 26582 98460429 ~ 98462432 (+) False G1131889
TU1288274 lncRNA upstream 26582 98460429 ~ 98462432 (+) False G1131889
TU1288276 lncRNA upstream 26582 98460429 ~ 98462432 (+) False G1131889
TU1288282 lncRNA upstream 26582 98460429 ~ 98462432 (+) True G1131889
TU1288298 lncRNA downstream 125 98489912 ~ 98490274 (+) True G1131901
TU1288318 lncRNA downstream 60986 98550773 ~ 98551130 (+) True G1131917
TU1288319 lncRNA downstream 62000 98551787 ~ 98552061 (+) True G1131918
TU1288320 lncRNA downstream 69250 98559037 ~ 98559574 (+) True G1131919
TU1288322 lncRNA downstream 70220 98560007 ~ 98560315 (+) True G1131920
XM_036939451.1 mRNA upstream 222987 98259570 ~ 98266027 (+) False LOC118936514
XM_036939438.1 mRNA upstream 270729 98187732 ~ 98218285 (+) False LOC110516721
XM_036939437.1 mRNA upstream 270730 98187738 ~ 98218284 (+) True LOC110516721
XM_036939566.1 mRNA upstream 366936 98101643 ~ 98122078 (+) True LOC118937837
XM_036939565.1 mRNA upstream 398641 98065664 ~ 98090373 (+) False LOC110485325
XM_021594997.2 mRNA downstream 486546 98976333 ~ 98977246 (+) False LOC110516605
XM_036939475.1 mRNA downstream 581209 99070996 ~ 99088300 (+) False LOC110539183
XM_036939478.1 mRNA downstream 627614 99117401 ~ 99175955 (+) False epn3a
XM_036939476.1 mRNA downstream 627615 99117402 ~ 99175955 (+) False epn3a
XM_036939477.1 mRNA downstream 627615 99117402 ~ 99175955 (+) False epn3a
TU1287770 other upstream 222987 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other upstream 222987 98260162 ~ 98266027 (+) False LOC118936514
TU1287587 other upstream 666957 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1325935 97162262 ~ 97163079 (+) True G1130780
TU1286316 other upstream 1787077 96678532 ~ 96701937 (+) True LOC118937804
TU1288518 other downstream 235070 98724857 ~ 98725197 (+) True G1132060
TU1288511 other downstream 274172 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 292352 98782139 ~ 98783327 (+) True G1132082
TU1288564 other downstream 305971 98795758 ~ 98797512 (+) True G1132093
TU1288658 other downstream 484656 98974443 ~ 98974926 (+) True G1132174

Expression Profile