RNA id: TU1288324


Basic Information

Item Value
RNA id TU1288324
length 1338
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1131921
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98564461 ~ 98565835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAATGGTTGTGTGAACTAGCAGCCACTCAACAGCTTGTGTCAGTCTTTAATTACATCACCATAACACTAGACACATCTGTGGGAtcatctggttctcctctccatcataacaggCTAACACTAGACACATCTGTGGGATCATCTGGTactcctctccatcataacagactaacACTAGACACATCTGTGGGATCATCTGGTTCTCCTTTCCATCATAACAGGCTAAtgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaaacatcatctggttctcctctccatcataacagactaatgATCTGGTTCTCCTTTCCATCATAACAGGCTAAtgatctggttctcctctccatcataacagactaaacatcatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttcttctctccatcataacagactactgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgagctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctgattctcctctccatcataacagactaatgatctggttcttctctccatcataacagactaatgatctggttctcctctccatcataacagactactgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaacacatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatagacatcatctggttctcctctccatcataacagactactgatctggttctcctctccatcataacagactaattatctggttctcctctccatcataacagactagacatcatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatgatctggttctcctctccatcataacagactaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288322 lncRNA upstream 4146 98560007 ~ 98560315 (+) True G1131920
TU1288320 lncRNA upstream 4887 98559037 ~ 98559574 (+) True G1131919
TU1288319 lncRNA upstream 12400 98551787 ~ 98552061 (+) True G1131918
TU1288318 lncRNA upstream 13331 98550773 ~ 98551130 (+) True G1131917
TU1288298 lncRNA upstream 74187 98489912 ~ 98490274 (+) True G1131901
TU1288333 lncRNA downstream 11242 98577077 ~ 98577697 (+) True G1131929
TU1288337 lncRNA downstream 17384 98583219 ~ 98583895 (+) True G1131932
TU1288357 lncRNA downstream 50364 98616199 ~ 98617748 (+) True G1131942
TU1288459 lncRNA downstream 94574 98660409 ~ 98660732 (+) True G1132019
TU1288460 lncRNA downstream 95666 98661501 ~ 98661711 (+) True G1132020
XM_036939459.1 mRNA upstream 222 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA upstream 222 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA upstream 222 98427914 ~ 98564239 (+) False LOC110487124
XM_036939460.1 mRNA upstream 2775 98425760 ~ 98561686 (+) False LOC110487124
XM_036939458.1 mRNA upstream 2775 98427911 ~ 98561686 (+) False LOC110487124
XM_021594997.2 mRNA downstream 410498 98976333 ~ 98977246 (+) False LOC110516605
XM_036939475.1 mRNA downstream 505161 99070996 ~ 99088300 (+) False LOC110539183
XM_036939478.1 mRNA downstream 551566 99117401 ~ 99175955 (+) False epn3a
XM_036939476.1 mRNA downstream 551567 99117402 ~ 99175955 (+) False epn3a
XM_036939477.1 mRNA downstream 551567 99117402 ~ 99175955 (+) False epn3a
TU1287770 other upstream 298434 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other upstream 298434 98260162 ~ 98266027 (+) False LOC118936514
TU1287587 other upstream 742404 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1401382 97162262 ~ 97163079 (+) True G1130780
TU1286316 other upstream 1862524 96678532 ~ 96701937 (+) True LOC118937804
TU1288518 other downstream 159022 98724857 ~ 98725197 (+) True G1132060
TU1288511 other downstream 198124 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 216304 98782139 ~ 98783327 (+) True G1132082
TU1288564 other downstream 229923 98795758 ~ 98797512 (+) True G1132093
TU1288658 other downstream 408608 98974443 ~ 98974926 (+) True G1132174

Expression Profile