RNA id: TU1288505


Basic Information

Item Value
RNA id TU1288505
length 258
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1132053
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98713594 ~ 98713851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaccaccctggacggttctgacctagaatatgtggacaactataaatacctaggtgtctggctagactgtaaactctccttccagactcatattaaacatctccaatccaaaatcaatctgctttctatttcgcaacaaagcctccttcactcaagccgtcaaacttaccctagtaaaactgactatcctaccgatcatcgtcttcggtgatgtcatctacaaaatagtttCCAATACTCTACCGAGCAAACTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288486 lncRNA upstream 31016 98682320 ~ 98682578 (+) True G1132037
TU1288485 lncRNA upstream 31827 98681431 ~ 98681767 (+) True G1132036
TU1288475 lncRNA upstream 44564 98668830 ~ 98669030 (+) True G1132029
TU1288467 lncRNA upstream 47172 98665515 ~ 98666422 (+) False G1132026
TU1288466 lncRNA upstream 47172 98665865 ~ 98666422 (+) True G1132026
TU1288507 lncRNA downstream 1911 98715762 ~ 98716312 (+) True G1132055
TU1288508 lncRNA downstream 3152 98717003 ~ 98717360 (+) True G1132056
TU1288522 lncRNA downstream 22831 98736682 ~ 98739916 (+) True G1132064
TU1288525 lncRNA downstream 26464 98740315 ~ 98741914 (+) True G1132067
TU1288532 lncRNA downstream 32663 98746514 ~ 98747637 (+) True G1132071
XM_036939459.1 mRNA upstream 149355 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA upstream 149355 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA upstream 149355 98427914 ~ 98564239 (+) False LOC110487124
XM_036939460.1 mRNA upstream 151908 98425760 ~ 98561686 (+) False LOC110487124
XM_021594997.2 mRNA downstream 262482 98976333 ~ 98977246 (+) False LOC110516605
XM_036939475.1 mRNA downstream 357145 99070996 ~ 99088300 (+) False LOC110539183
XM_036939478.1 mRNA downstream 403550 99117401 ~ 99175955 (+) False epn3a
XM_036939476.1 mRNA downstream 403551 99117402 ~ 99175955 (+) False epn3a
XM_036939477.1 mRNA downstream 403551 99117402 ~ 99175955 (+) False epn3a
TU1287770 other upstream 447567 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other upstream 447567 98260162 ~ 98266027 (+) False LOC118936514
TU1287587 other upstream 891537 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1550515 97162262 ~ 97163079 (+) True G1130780
TU1286316 other upstream 2011657 96678532 ~ 96701937 (+) True LOC118937804
TU1288518 other downstream 11006 98724857 ~ 98725197 (+) True G1132060
TU1288511 other downstream 50108 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 68288 98782139 ~ 98783327 (+) True G1132082
TU1288564 other downstream 81907 98795758 ~ 98797512 (+) True G1132093
TU1288658 other downstream 260592 98974443 ~ 98974926 (+) True G1132174

Expression Profile