RNA id: TU1288508


Basic Information

Item Value
RNA id TU1288508
length 358
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1132056
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98717003 ~ 98717360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgctctccagGTCCTAACACCTCTATAGACTCTGTTCATGAGGATCCTCACCGTTTAACCTCATCGTTAGTCAACAGCAGATAGAACACATGTCTTCTTACACTTAAgtctggccacacacacacacacacacacacacagtctaaccCTTGTGGAAACAAACAATTCCGTCCCATTCAAAATTCTGTTTTCCctaagcctaaacctaaccttaatcatGAAACTAACCCTAGCATCTAGCCCTGACACTAATTTTAACCTTAACACTAATTctagcacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288507 lncRNA upstream 691 98715762 ~ 98716312 (+) True G1132055
TU1288505 lncRNA upstream 3152 98713594 ~ 98713851 (+) True G1132053
TU1288486 lncRNA upstream 34425 98682320 ~ 98682578 (+) True G1132037
TU1288485 lncRNA upstream 35236 98681431 ~ 98681767 (+) True G1132036
TU1288475 lncRNA upstream 47973 98668830 ~ 98669030 (+) True G1132029
TU1288522 lncRNA downstream 19322 98736682 ~ 98739916 (+) True G1132064
TU1288525 lncRNA downstream 22955 98740315 ~ 98741914 (+) True G1132067
TU1288532 lncRNA downstream 29154 98746514 ~ 98747637 (+) True G1132071
TU1288512 lncRNA downstream 45080 98762440 ~ 98763784 (+) False G1132058
TU1288544 lncRNA downstream 59121 98776481 ~ 98777682 (+) False G1132080
XM_036939459.1 mRNA upstream 152764 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA upstream 152764 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA upstream 152764 98427914 ~ 98564239 (+) False LOC110487124
XM_036939460.1 mRNA upstream 155317 98425760 ~ 98561686 (+) False LOC110487124
XM_021594997.2 mRNA downstream 258973 98976333 ~ 98977246 (+) False LOC110516605
XM_036939475.1 mRNA downstream 353636 99070996 ~ 99088300 (+) False LOC110539183
XM_036939478.1 mRNA downstream 400041 99117401 ~ 99175955 (+) False epn3a
XM_036939476.1 mRNA downstream 400042 99117402 ~ 99175955 (+) False epn3a
XM_036939477.1 mRNA downstream 400042 99117402 ~ 99175955 (+) False epn3a
TU1287770 other upstream 450976 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other upstream 450976 98260162 ~ 98266027 (+) False LOC118936514
TU1287587 other upstream 894946 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1553924 97162262 ~ 97163079 (+) True G1130780
TU1286316 other upstream 2015066 96678532 ~ 96701937 (+) True LOC118937804
TU1288518 other downstream 7497 98724857 ~ 98725197 (+) True G1132060
TU1288511 other downstream 46599 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 64779 98782139 ~ 98783327 (+) True G1132082
TU1288564 other downstream 78398 98795758 ~ 98797512 (+) True G1132093
TU1288658 other downstream 257083 98974443 ~ 98974926 (+) True G1132174

Expression Profile