RNA id: TU1288525


Basic Information

Item Value
RNA id TU1288525
length 530
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1132067
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98740315 ~ 98741914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTAGGGTACAACTTTTTTTTACAAGAGCCCAAtaggaagtagggcactacttttttttacaagattccaataggaagtagggcactactttttttaCAAGATTCCAAtaggaagtagggcactacttttttttACAAGAGCCCAATAGGAAGtaactatgaagggaatagggtgccatttgggacgcagatctTATTCCAAGCCTTCAATTCAGCTGCCCGCTAATCACATGTAGTGACATTAGAAACACGTACGGAAGAAGAATAAGATGTGGGCAATTTGCACTCATGAAGACAGAGGAATATAACTGGCACGGAAGTAGAGAGATTAATCCCACTTAGAGCCAATCACTGTCTGAGGTATAGAAAGCAGTCTGACTACCCTTCTACCCATCTTTCTGTCCTGTCTCCTATTTTCTCTTCATTCTATTATAATCTAAACCTACTGCCACTCCCGTCAAACCACTACTGAGACAGGCTAGCTAGTGTTGTTCTACTTGCTGTCACTCCCGTCAAACCACTACTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288522 lncRNA upstream 399 98736682 ~ 98739916 (+) True G1132064
TU1288508 lncRNA upstream 22955 98717003 ~ 98717360 (+) True G1132056
TU1288507 lncRNA upstream 24003 98715762 ~ 98716312 (+) True G1132055
TU1288505 lncRNA upstream 26464 98713594 ~ 98713851 (+) True G1132053
TU1288486 lncRNA upstream 57737 98682320 ~ 98682578 (+) True G1132037
TU1288532 lncRNA downstream 4600 98746514 ~ 98747637 (+) True G1132071
TU1288512 lncRNA downstream 20526 98762440 ~ 98763784 (+) False G1132058
TU1288544 lncRNA downstream 34567 98776481 ~ 98777682 (+) False G1132080
TU1288545 lncRNA downstream 34567 98776481 ~ 98777682 (+) True G1132080
TU1288538 lncRNA downstream 44801 98786715 ~ 98788846 (+) True G1132075
XM_036939459.1 mRNA upstream 176076 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA upstream 176076 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA upstream 176076 98427914 ~ 98564239 (+) False LOC110487124
XM_036939460.1 mRNA upstream 178629 98425760 ~ 98561686 (+) False LOC110487124
XM_021594997.2 mRNA downstream 234419 98976333 ~ 98977246 (+) False LOC110516605
XM_036939475.1 mRNA downstream 329082 99070996 ~ 99088300 (+) False LOC110539183
XM_036939478.1 mRNA downstream 375487 99117401 ~ 99175955 (+) False epn3a
XM_036939476.1 mRNA downstream 375488 99117402 ~ 99175955 (+) False epn3a
XM_036939477.1 mRNA downstream 375488 99117402 ~ 99175955 (+) False epn3a
TU1288518 other upstream 15118 98724857 ~ 98725197 (+) True G1132060
TU1287770 other upstream 474288 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other upstream 474288 98260162 ~ 98266027 (+) False LOC118936514
TU1287587 other upstream 918258 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1577236 97162262 ~ 97163079 (+) True G1130780
TU1288511 other downstream 22045 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 40225 98782139 ~ 98783327 (+) True G1132082
TU1288564 other downstream 53844 98795758 ~ 98797512 (+) True G1132093
TU1288658 other downstream 232529 98974443 ~ 98974926 (+) True G1132174
TU1288679 other downstream 259442 99001356 ~ 99001773 (+) True G1132187

Expression Profile