RNA id: TU1288588


Basic Information

Item Value
RNA id TU1288588
length 235
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1132114
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98834360 ~ 98834956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCCATGTGTGGAAAGAGCCATGTGTGGAAAGAGTCATATGTGGAAAGAGTCATGTGTGGAAAGAGCCATGTGTGGAAAGAGTCATATGTGGAAAGAGTCATGTGTGGAAAGAGTCATGTGGAAAGAGCCATATGTGGAAAGAGCCATATGTGGAAAGAGTCATGTGTGGAAAGAGTCATGTGTGGAAAGAGTCATGTGGAAAGAGCCATATGTGGAAAGAGTCATGTGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288528 lncRNA upstream 21476 98810948 ~ 98812884 (+) False G1132068
TU1288529 lncRNA upstream 21476 98810948 ~ 98812884 (+) True G1132068
TU1288573 lncRNA upstream 27956 98805427 ~ 98806404 (+) True G1132100
TU1288569 lncRNA upstream 32064 98801450 ~ 98802296 (+) True G1132097
TU1288538 lncRNA upstream 45514 98786715 ~ 98788846 (+) True G1132075
TU1288593 lncRNA downstream 5170 98840126 ~ 98840659 (+) True G1132119
TU1288629 lncRNA downstream 66679 98901635 ~ 98902249 (+) True G1132153
TU1288644 lncRNA downstream 112925 98947881 ~ 98949364 (+) True G1132166
TU1288655 lncRNA downstream 128638 98963594 ~ 98965406 (+) False G1132172
TU1288654 lncRNA downstream 129483 98964439 ~ 98965406 (+) True G1132172
XM_036939459.1 mRNA upstream 270121 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA upstream 270121 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA upstream 270121 98427914 ~ 98564239 (+) False LOC110487124
XM_036939460.1 mRNA upstream 272674 98425760 ~ 98561686 (+) False LOC110487124
XM_021594997.2 mRNA downstream 141377 98976333 ~ 98977246 (+) False LOC110516605
XM_036939475.1 mRNA downstream 236040 99070996 ~ 99088300 (+) False LOC110539183
XM_036939478.1 mRNA downstream 282445 99117401 ~ 99175955 (+) False epn3a
XM_036939476.1 mRNA downstream 282446 99117402 ~ 99175955 (+) False epn3a
XM_036939477.1 mRNA downstream 282446 99117402 ~ 99175955 (+) False epn3a
TU1288564 other upstream 36848 98795758 ~ 98797512 (+) True G1132093
TU1288549 other upstream 51033 98782139 ~ 98783327 (+) True G1132082
TU1288511 other upstream 67103 98763959 ~ 98767257 (+) True G1132058
TU1288518 other upstream 109163 98724857 ~ 98725197 (+) True G1132060
TU1287769 other upstream 568333 98260162 ~ 98266027 (+) False LOC118936514
TU1288658 other downstream 139487 98974443 ~ 98974926 (+) True G1132174
TU1288679 other downstream 166400 99001356 ~ 99001773 (+) True G1132187
TU1288971 other downstream 236091 99071047 ~ 99073632 (+) False LOC110539183
TU1288966 other downstream 243154 99078110 ~ 99083884 (+) False LOC110539183
TU1288993 other downstream 292661 99127617 ~ 99151314 (+) True epn3a

Expression Profile