RNA id: TU1288679


Basic Information

Item Value
RNA id TU1288679
length 344
RNA type TUCP
GC content 0.43
exon number 2
gene id G1132187
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99001356 ~ 99001773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacatctagagagagagaggatggtgttaacacagagtacatctatagagagagaggatggtgtgaacacagagtacatctatagagagagagaggatggtgtgaacacagagtacatctatagagagagagaggatggtgttaacacagagtacatctatagagagagaggatggtgtgaacacagagtacatctagagagagagaggatggtgttaacacagagtacatctatagagagagaggatggtgtgaacacagagtacatctatagagagagaggatggtgtgaacacagagtacatctatagagagagaggatggtgtgaacacagagtacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288556 lncRNA upstream 19729 98980410 ~ 98981627 (+) True G1132087
TU1288659 lncRNA upstream 24794 98976345 ~ 98976562 (+) True LOC110516605
TU1288657 lncRNA upstream 27275 98973762 ~ 98974081 (+) True G1132173
TU1288655 lncRNA upstream 35950 98963594 ~ 98965406 (+) False G1132172
TU1288654 lncRNA upstream 35950 98964439 ~ 98965406 (+) True G1132172
TU1288680 lncRNA downstream 1598 99003371 ~ 99004125 (+) False G1132188
TU1288681 lncRNA downstream 1598 99003371 ~ 99004125 (+) True G1132188
TU1288689 lncRNA downstream 8515 99010288 ~ 99012932 (+) True G1132192
TU1288693 lncRNA downstream 22883 99024656 ~ 99024928 (+) True G1132196
TU1288694 lncRNA downstream 23263 99025036 ~ 99025357 (+) True G1132197
XM_021594997.2 mRNA upstream 24110 98976333 ~ 98977246 (+) False LOC110516605
XM_036939459.1 mRNA upstream 437117 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA upstream 437117 98427914 ~ 98564239 (+) False LOC110487124
XM_036939461.1 mRNA upstream 437117 98427914 ~ 98564239 (+) False LOC110487124
XM_036939460.1 mRNA upstream 439670 98425760 ~ 98561686 (+) False LOC110487124
XM_036939475.1 mRNA downstream 69223 99070996 ~ 99088300 (+) False LOC110539183
XM_036939478.1 mRNA downstream 115628 99117401 ~ 99175955 (+) False epn3a
XM_036939476.1 mRNA downstream 115629 99117402 ~ 99175955 (+) False epn3a
XM_036939477.1 mRNA downstream 115629 99117402 ~ 99175955 (+) False epn3a
XM_036939479.1 mRNA downstream 181344 99183117 ~ 99188055 (+) True LOC110538843
TU1288658 other upstream 26430 98974443 ~ 98974926 (+) True G1132174
TU1288564 other upstream 203844 98795758 ~ 98797512 (+) True G1132093
TU1288549 other upstream 218029 98782139 ~ 98783327 (+) True G1132082
TU1288511 other upstream 234099 98763959 ~ 98767257 (+) True G1132058
TU1288518 other upstream 276159 98724857 ~ 98725197 (+) True G1132060
TU1288971 other downstream 69274 99071047 ~ 99073632 (+) False LOC110539183
TU1288966 other downstream 76337 99078110 ~ 99083884 (+) False LOC110539183
TU1288993 other downstream 125844 99127617 ~ 99151314 (+) True epn3a
TU1289034 other downstream 187163 99188936 ~ 99196702 (+) True LOC110538844
TU1289530 other downstream 693799 99695572 ~ 99697137 (+) True LOC110485297

Expression Profile