RNA id: TCONS_00041300


Basic Information

Item Value
RNA id TCONS_00041300
length 414
RNA type mRNA
GC content 0.50
exon number 2
gene id XLOC_021000
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 14178813 ~ 14272699 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCAGAGTGCTATCCGGGTGGATACAGGACGTTGAGGAACGCATATCGAAGCGTTGATTTCGACTCCACTGAACTTCAAAACACAGCCATACAGGAGCTGATTTGTGATCATTCATTGCCGCCAGGATGGTACCGATTTTCCATTAACAATAAACCAGCAGAAATGCCAACCCGCTGCGTTGAGATGAACCGCTGTGGTACACAGGCTCCAGTGTGGTTGTCTCTTAAGGACAGCTCTCTGCCGAGGCCTGGAGAGGTTAAGCAGCTTTCGGCTTGTGCAACATGGCAGTTCTTCCACGGAAGCACTAAAGATTGCTGTCTTTTCCGGATCCCGATCTCAGTCCGCAACTGTGGAGAGTTCCTGCTATACTTCCTACAGCCGACTCAAGGTTGCATGGGATACTGTGCAGAAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-577 Predicted to enable calcium ion binding activity.

Ensembl:

ensembl_id ENSDART00000168264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042361 lncRNA downstream 566527 13668985 ~ 13693627 (-) True XLOC_020992
TCONS_00042360 lncRNA downstream 610550 13638850 ~ 13649604 (-) True XLOC_020991
TCONS_00041944 lncRNA downstream 652591 13606281 ~ 13607563 (-) True XLOC_020990
TCONS_00041276 lncRNA downstream 828850 13422568 ~ 13431304 (-) False XLOC_020988
TCONS_00042362 lncRNA upstream 13631 14275746 ~ 14298602 (-) False XLOC_021001
TCONS_00041301 lncRNA upstream 13708 14275823 ~ 14295103 (-) True XLOC_021001
TCONS_00042363 lncRNA upstream 37685 14299800 ~ 14301873 (-) True XLOC_021002
TCONS_00042364 lncRNA upstream 70335 14332450 ~ 14334135 (-) True XLOC_021004
TCONS_00042365 lncRNA upstream 502883 14764998 ~ 14773881 (-) False XLOC_021009
TCONS_00041299 mRNA downstream 4495 14251343 ~ 14255659 (-) False XLOC_021000
TCONS_00041298 mRNA downstream 12878 14223121 ~ 14247276 (-) False XLOC_021000
TCONS_00041295 mRNA downstream 98845 14145510 ~ 14161309 (-) True XLOC_020999
TCONS_00041294 mRNA downstream 131438 14127472 ~ 14128716 (-) True XLOC_020998
TCONS_00041292 mRNA downstream 144838 14084036 ~ 14115316 (-) False XLOC_020997
TCONS_00041302 mRNA upstream 42562 14304677 ~ 14309817 (-) True XLOC_021003
TCONS_00041303 mRNA upstream 76063 14338178 ~ 14346575 (-) True XLOC_021005
TCONS_00041304 mRNA upstream 88724 14350839 ~ 14361022 (-) True XLOC_021006
TCONS_00041305 mRNA upstream 101837 14363952 ~ 14367966 (-) False XLOC_021007
TCONS_00041306 mRNA upstream 101837 14363952 ~ 14475927 (-) False XLOC_021007
TCONS_00041297 other downstream 12912 14223121 ~ 14247242 (-) False XLOC_021000
TCONS_00041293 other downstream 171092 14088353 ~ 14089062 (-) True XLOC_020997
TCONS_00041290 other downstream 240432 14019604 ~ 14019722 (-) True XLOC_020996
TCONS_00041289 other downstream 314087 13945953 ~ 13946067 (-) True XLOC_020995
TCONS_00041286 other downstream 543752 13715455 ~ 13716402 (-) True XLOC_020993
TCONS_00041309 other upstream 430997 14693112 ~ 14693228 (-) True XLOC_021008
TCONS_00041310 other upstream 502883 14764998 ~ 14773300 (-) False XLOC_021009
TCONS_00041327 other upstream 1436359 15698474 ~ 15699853 (-) False XLOC_021022
TCONS_00041329 other upstream 1443947 15706062 ~ 15717893 (-) False XLOC_021023
TCONS_00041332 other upstream 1519493 15781608 ~ 15781724 (-) True XLOC_021027

Expression Profile

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