RNA id: TU1288928


Basic Information

Item Value
RNA id TU1288928
length 2969
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G1132340
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99048287 ~ 99051795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggacaaatacataggtagtagttactggaacctggacataggtagtagttactggaaccaggacataggtagtagttactggaaccaggacaaatacataggtagtagttactggaaccaggacataggtagtagttactggaacctggacaaatacataggtagtagttactggaaccaggacaaatacataggtagtagttactggaacCAGGACATTGGTAGTAGTTACTGGTACTGGtagtgattgtgtgatagattgtCTCTCTATCTGACTCAACTCTAAACCACTGCTGCAAAAATGCTGCATTTCGTGACGGAAACTCGGGAACCTAGGAGTTAACCTAAGTTTAACAGCCTGGTTAATTCTGATACTTTCCAAGTGGGAAACTCAGGTGTCATCTCTCTATGAGTTTTCAAGTACTAGTTACCTAgcaacagtatgtgtgtgtacctgtatagAGAATATCCTCTTACCTCTTATCGCAAGTCGAGGTAGTATTTTAGGATTATACTGAGTAGATATAGGTTCACTAGAAATAGTTATACATGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGGCTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTGTGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGGCTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTGTGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGGCTGCTCTATGGACAGATTGAGGCTATTTATTCAGTAGACTGCTATATGGACAGGTTGAGGCTATTTATTCAGTAGGCTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCGATGGACAGAATGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATGTATTCAGTAGACTGCTCTATGGACAGGTTGAGACTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGACTATGTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGGCTGCTATATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTATATGGACAGGTTGAGGCTATTTATTCAGTAGACTGCTCTATGGACAGGTTGAGACTATTAATTCAGTAGCCAGCTatactgccttcagaaagtgttcacaccccttgattttttccgcattttgttgtGTAACAAGGTGCgatttaattgtaatttattgtcaacgatctacacaaaatactctgtgaTGTTAAAGTGGAAGAAAAAATCTAACAATTGTAAAGAAATGATGGAAAATGAAACACTAATAGATCTTGCTTATTTAAGTGTTCAacctcctgagtcaatacatgttagaatcacctttggcagcgattacagctgtgagtatttctgggtgagtctctccgagctttacacacctggattctacaatattttcacattattctttctaaaattcttcaagctcttttcaaattggttgttgatcattgctagacagtcatATTATaatcttgtcatagattttcaagaagatttaagtcaaaactataactagGCCATTCAGGAACAGTCTATGTAATTTTGGTCAACAACTCCAGGGATTTTTTGGCCTTGTTTTCaaggctattgtcctgctgaaaggtgcatttttctctctgtgtctgttggaaagcaaactgaacaaggttttcctctaagattgtacctgtgcttagctctattccatttatttttatttaaaaaaaaacttcctagtccttgctgatgacaagcatactcttaacatgatgcagccaccaccatgattcaaaatatgaagagtggacCTCATCAAATAAATTTCAAcgcgtgtttagcagatgttattgcaggtgtagcgaaatgcttgtaatgaCAATTTAAAGTTTGTATCTTTTAGAGACTGTATCCATAATATAGTGAGGTCATCAGAGTTGGGTTTTAGAGAAACTGGAGACATTATCCTGGTCCTCAATGAGGCCCTTCAAGGTAGAAGAGGAATCAAGAGAAATCTTCAATCACCGACATACATTGATACTTTTGCCTCTTAATTTTTGCCCCTTAATGTTATCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCGTAATGTTATCATTAGACCTTGATGTTATCATTAGACCGTAATGTTATCATTAGACCTTGATGTTATCATTAGACCTTAATGTTATCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCTTGGTGTTATCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCGTAATGTTATCATTAGACCTTGATGTTATCATTAGACCGTAATGTTTTCATTAGACCTTGATGTTATCATTAGACCTTGATGTTATCATTAGACCGTAATGTTATCATTAGACCGTAATGTTATCATTAGACCTTAATGTTATCATTAGACCTTAATGTTATCATTAGACCGTtctactacaatgttgttgatccatcctcagtgttctcctatcacagccattaaactctgtaactgctttaaagtcaccattgacttcatggtgaaatccttgagcggtttccttcctctccggcaactgagttagaaaggacgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288937 lncRNA downstream 501 99046418 ~ 99047786 (-) False G1132342
TU1288930 lncRNA upstream 1095 99052890 ~ 99053438 (-) False LOC118937838
TU1288951 lncRNA upstream 9927 99061722 ~ 99061936 (-) True G1132349
TU1288952 lncRNA upstream 11341 99063136 ~ 99063422 (-) True G1132350
TU1288958 lncRNA upstream 15535 99067330 ~ 99067532 (-) True G1132356
TU1288959 lncRNA upstream 16027 99067822 ~ 99068110 (-) True G1132357
XR_005035258.1 mRNA downstream 2667 99042019 ~ 99045620 (-) True LOC110538834
XM_036939473.1 mRNA downstream 2668 99042019 ~ 99045619 (-) False LOC110538834
XM_036939474.1 mRNA downstream 3415 99042019 ~ 99044872 (-) False LOC110538834
XM_036939471.1 mRNA downstream 7453 99028168 ~ 99040834 (-) True btr02
XM_036939470.1 mRNA downstream 11625 99028168 ~ 99036662 (-) False btr02
XM_036939569.1 mRNA upstream 1489 99053284 ~ 99058841 (-) False LOC118937838
XM_021625818.2 mRNA upstream 38826 99090621 ~ 99092245 (-) False LOC110538840
XM_021625826.2 mRNA upstream 126291 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA upstream 126291 99178086 ~ 99183106 (-) False LOC110538845
XM_036939487.1 mRNA upstream 166819 99218614 ~ 99231888 (-) True LOC110517411
TU1288904 other downstream 38175 99006627 ~ 99010112 (-) True G1132328
TU1288236 other downstream 664472 98382970 ~ 98383815 (-) True G1131863
TU1288159 other downstream 788600 98258882 ~ 98259687 (-) True LOC118936513
TU1287948 other downstream 1073567 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 1187769 97857599 ~ 97860518 (-) True G1131666
TU1288947 other upstream 1709 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 39921 99091716 ~ 99092238 (-) True LOC110538840
TU1289204 other upstream 114153 99165948 ~ 99166607 (-) True G1132564
TU1289215 other upstream 121870 99173665 ~ 99175908 (-) False G1132569
TU1289219 other upstream 130166 99181961 ~ 99182915 (-) False LOC110538845

Expression Profile