RNA id: TCONS_00042362


Basic Information

Item Value
RNA id TCONS_00042362
length 888
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_021001
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 14275746 ~ 14298602 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAACAGGGACATGAAAACCACAGGAAGAGCGAGAGAGATTACAAACTAAATGTATTCACCAAAGATCCTGAAAATTGATGATATGCAGAGAACCTACACATATACCGACTCTCATGTTACATACGATGATTCACTCTCTGCTGTGGATTGTTTGGAAAATGGAAATGTTTGTCGgagcaacaacaactgcaaacTCTGTGAGGAAACACCATTATATCCACCATATGTCCCAGCTATTCGTCCTCAAATATGGACAATTAACTCCCATAGTTTTGTCAAATTTCAGACCACAGCACCACTCCTTCATCACAACTTCTGGAGATCTTCTATTCAAATTCCCGGCTTAAAGGAAAAGCCCATCCTGAAGACGAATGAAGTTTTTTTCAACCCAAGTCCAAAGGCTCCCCCTTGGCATGAGGTCTGCACTTTAATCCAACAGCTTGAGAGGGAATGACAGCCGAAGACTTTCGCCAAAGCTAGTTCATGACAGGAACCTCGACTTCTGCTCTGGCCAGACTGCAAGCATTACAAGCGGATATAACGGCTCAAACTTCAGCCCTCTCACCCTCATCCAGGTGGCATCCGAGTTGCTCCATGCCAAGGGATTGAGAGGGATCTACACAATTGGACAGTCAGGAATTTGGTTTGGAAATGAACAagcccagagagagagagagagatgaggtgTTGACTTGAAGTTTTGAGACCGAAAGCTGGATGCTTTCAAGAAGATCTGCTAATATTGAAAACCGACAGAGATTTATGAGGGTGCATTTGCGCAACAGTGTTTTTAACTAAAAGTGAAAAATGTATGCGCGTTTTGTCTTttcctttaaacaaaaacaaagtgcaaagtgcaaaaaaataaaataaaacattgcaatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042361 lncRNA downstream 582119 13668985 ~ 13693627 (-) True XLOC_020992
TCONS_00042360 lncRNA downstream 626142 13638850 ~ 13649604 (-) True XLOC_020991
TCONS_00041944 lncRNA downstream 668183 13606281 ~ 13607563 (-) True XLOC_020990
TCONS_00041276 lncRNA downstream 844442 13422568 ~ 13431304 (-) False XLOC_020988
TCONS_00041275 lncRNA downstream 844442 13422568 ~ 13431304 (-) True XLOC_020988
TCONS_00042363 lncRNA upstream 1198 14299800 ~ 14301873 (-) True XLOC_021002
TCONS_00042364 lncRNA upstream 33848 14332450 ~ 14334135 (-) True XLOC_021004
TCONS_00042365 lncRNA upstream 466396 14764998 ~ 14773881 (-) False XLOC_021009
TCONS_00041945 lncRNA upstream 475134 14773736 ~ 14781192 (-) False XLOC_021009
TCONS_00042366 lncRNA upstream 476381 14774983 ~ 14786979 (-) False XLOC_021009
TCONS_00041296 mRNA downstream 3047 14178813 ~ 14272699 (-) False XLOC_021000
TCONS_00041300 mRNA downstream 13631 14260154 ~ 14262115 (-) True XLOC_021000
TCONS_00041299 mRNA downstream 20087 14251343 ~ 14255659 (-) False XLOC_021000
TCONS_00041298 mRNA downstream 28470 14223121 ~ 14247276 (-) False XLOC_021000
TCONS_00041295 mRNA downstream 114437 14145510 ~ 14161309 (-) True XLOC_020999
TCONS_00041302 mRNA upstream 6075 14304677 ~ 14309817 (-) True XLOC_021003
TCONS_00041303 mRNA upstream 39576 14338178 ~ 14346575 (-) True XLOC_021005
TCONS_00041304 mRNA upstream 52237 14350839 ~ 14361022 (-) True XLOC_021006
TCONS_00041305 mRNA upstream 65350 14363952 ~ 14367966 (-) False XLOC_021007
TCONS_00041306 mRNA upstream 65350 14363952 ~ 14475927 (-) False XLOC_021007
TCONS_00041297 other downstream 28504 14223121 ~ 14247242 (-) False XLOC_021000
TCONS_00041293 other downstream 186684 14088353 ~ 14089062 (-) True XLOC_020997
TCONS_00041290 other downstream 256024 14019604 ~ 14019722 (-) True XLOC_020996
TCONS_00041289 other downstream 329679 13945953 ~ 13946067 (-) True XLOC_020995
TCONS_00041282 other downstream 559161 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041309 other upstream 394510 14693112 ~ 14693228 (-) True XLOC_021008
TCONS_00041310 other upstream 466396 14764998 ~ 14773300 (-) False XLOC_021009
TCONS_00041327 other upstream 1399872 15698474 ~ 15699853 (-) False XLOC_021022
TCONS_00041329 other upstream 1407460 15706062 ~ 15717893 (-) False XLOC_021023
TCONS_00041332 other upstream 1483006 15781608 ~ 15781724 (-) True XLOC_021027