RNA id: TU1289204


Basic Information

Item Value
RNA id TU1289204
length 660
RNA type TUCP
GC content 0.53
exon number 1
gene id G1132564
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99165948 ~ 99166607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAGAGATAATGCTGGAGGGAAGACAGTAGAGTATGAGTGGTGAGCAGAGAGAGATAATGCTGGAGGGAAGACAGTAGAGTATGAGTGGTGAGCAGAGAGAGATAATGCTGGAGGGCAGACAGTGCAGTAAGAGTGGCGAGCAGAGAGAGATAATGCTGGAGGGAAGACTGTATGAGTGGTGAGCAGAGAGAGATAATGCTGGAGGGCAGACAGTATGAGTGGTGAGCACAGAGAGAGTGATAATGCTGGAGggcagacagtacagtatgagtggtgagcagagagagagtgataatgCTAGAGggcagacagtacagtatgagtggTGAGCAGAGAGATAATGCTAGTGAATTGGGACCAGCTGTTGAGTTCTTTAGAGGCATGGAGCAGCTCTTACCCAGTGAGTCCCAGGGGTCGGAGGCTGCCCCAGCAGCAGCCTGGGCCTGGGGGAGGGGGTGGTGGAGAGGGGTGCGGACGTTCCCCCCTGGCAGACTCCAGGAGTTGGCACTAGCAGTAGGAGGCACCTCAGACGACACAGCAAACACCTCCACCAGATCCATCATGGCAGACTGTCCACAGAGAAACAACAAGTAGGTTCTAATCATTAACTTCACTAGCATCCcacctcgtcaacagccagtgaaactgcagggcgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289202 lncRNA downstream 3813 99161810 ~ 99162135 (-) True G1132562
TU1289201 lncRNA downstream 7287 99157971 ~ 99158661 (-) True G1132561
TU1289198 lncRNA downstream 9387 99155321 ~ 99156561 (-) False G1132560
TU1289199 lncRNA downstream 9387 99155321 ~ 99156561 (-) False G1132560
TU1289200 lncRNA downstream 9387 99155321 ~ 99156561 (-) True G1132560
TU1289205 lncRNA upstream 365 99166972 ~ 99167250 (-) True G1132565
TU1289207 lncRNA upstream 4637 99171244 ~ 99171487 (-) True G1132567
TU1289208 lncRNA upstream 5266 99171873 ~ 99172154 (-) True G1132568
TU1289210 lncRNA upstream 8182 99174789 ~ 99177478 (-) False G1132569
TU1289213 lncRNA upstream 8182 99174789 ~ 99177478 (-) False G1132569
XM_021625818.2 mRNA downstream 73703 99090621 ~ 99092245 (-) False LOC110538840
XM_036939569.1 mRNA downstream 107107 99053284 ~ 99058841 (-) False LOC118937838
XR_005035258.1 mRNA downstream 120328 99042019 ~ 99045620 (-) True LOC110538834
XM_036939473.1 mRNA downstream 120329 99042019 ~ 99045619 (-) False LOC110538834
XM_036939474.1 mRNA downstream 121076 99042019 ~ 99044872 (-) False LOC110538834
XM_021625826.2 mRNA upstream 11479 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA upstream 11479 99178086 ~ 99183106 (-) False LOC110538845
XM_036939487.1 mRNA upstream 52007 99218614 ~ 99231888 (-) True LOC110517411
XM_036939488.1 mRNA upstream 184922 99351529 ~ 99380971 (-) False LOC110538879
XM_036939490.1 mRNA upstream 372701 99539308 ~ 99556218 (-) False LOC110538877
TU1289169 other downstream 73710 99091716 ~ 99092238 (-) True LOC110538840
TU1288947 other downstream 106692 99053504 ~ 99059256 (-) True LOC118937838
TU1288904 other downstream 155836 99006627 ~ 99010112 (-) True G1132328
TU1288236 other downstream 782133 98382970 ~ 98383815 (-) True G1131863
TU1288159 other downstream 906261 98258882 ~ 98259687 (-) True LOC118936513
TU1289215 other upstream 7058 99173665 ~ 99175908 (-) False G1132569
TU1289219 other upstream 15354 99181961 ~ 99182915 (-) False LOC110538845
TU1289296 other upstream 159905 99326512 ~ 99326924 (-) True G1132625
TU1289696 other upstream 673832 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 673832 99840439 ~ 99846986 (-) False LOC110539068

Expression Profile