RNA id: TU1289210


Basic Information

Item Value
RNA id TU1289210
length 2270
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G1132569
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99173665 ~ 99177478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATAATCATGTGTGCAGTAGTATCTTCGATGTAGCCTAACTATGCTGGAGTagaaatacagtaactgtcataTAGATGTGTGGAAATACAATAACTGTCATACAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGgtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatatagGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatacaggtgtgtgaaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatataggtgtgtagaaatacagtaactgtcataTAGGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtgaaaatacagtaactgtcataTAGGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtgaaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacagGTGTTTGGCCTCCGGGGGGCAGACAGACATTGTGTAGAAAAGTCAACTCTTTGAAGAATGTGCTTCTCTAAGCATTCGATATGTAGAAACATTCCATTATAAAGTGTTTGATATTACAATCTAGCTaggcatatattatatatatatatatatattacacacagtcaTGTATTAACAGATGTAAAAAGGTTGAATGGTATCAAGTCAAGAAATATAGTATTGATCAACATGATCATGAAATAAAAGCTGTAAAATATGAACGAATGCAGATGCCAGGTGTCGTTATTAGTTCATCATAGCCTTATATTTGACGATGACAATCAGTGTTTCACAAGTAATGATCACAGCAATGAGAGAGggaaaataatcatgatatcaatTCATACATTCTAATATGCGTTGCTTTATAGGGGTCGAATGCTAGCTTCCTAACTTCCACCGAATTCAATTGAATTTCCACTTCtccccattgacatcaatgcaaaacTCAACTTGAAGTGAGAGCGTTAGGATTTGCCCCGCTATAGTGAGTCCTGCAGTGGTTCCGGTCTCTAAGAAAAGCAGATTTCACTCAATTATCCCTCAAAAGGGGGCCCTCCAGTTCACTATAACACACTAGAACTACCTTAGAATCTCTCTCGCCATCACCGCAGTTCCATTCCAACAGCAAACCATCCTTTTACACGAGAACTCAGTCAGACTGAGCCTTACTAGGCCTAATGTAACAAAAAGGAAGCTTAAAACTCAAGTGTTCATTATGTGGATGGGGGTTGGCTGGCGTCTCATCATCGGCGTGGAATGTTCTATGCCCGTTCTCAGAAATCGGAGTTGTAGTCGGCGCTAGGAATCATTCGGGAACATTTGCAGATAGAAATAGATTGAACAGAGGCGACACACTTCCCTTATTCTATCTGGTTGACAATCATATCTGTTCTATATGATACATTTTTATCTGAGTTGCAGTCTGTGCTGGGAAACGTTTTGAACAGATAGAAATAGATTGAATAGAGCCGACACGCTTCCCCTATTCTATCTGGCAGACAATTATATCTGTTCTACATGATACATTTCTATCTGAGCATTCTGTAACGTTACATCCTCCTGAACAGACTTGTCTGAGTTATCCCCTGGGGCATCATGGGAGAGATAATAGGAGAGAAAGAGCCAACCAATGAAAGCAGTCCAGAGAGCGGATCGACCAATCAGCATAGAGCAGTGCGGCAGGAACAGTGGGCGTCCTGTCCCAGTGCATTGTGGTCCGTCGGTCGGAGAGATAAGCAGGCATATCTGGTGTACAATCAGTTCAGTGCTGGATCAGGAGCAACAGTGAGGAGCCAATCAAACTAAAGTATGCAGCAGAGTGGGCGGGGCATGTGACTAGGTAAGAAGCAGTTGGAAAAGCAGTTaactaacctggtcccagatctgtttctgctgtATAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289208 lncRNA downstream 2635 99171873 ~ 99172154 (-) True G1132568
TU1289207 lncRNA downstream 3302 99171244 ~ 99171487 (-) True G1132567
TU1289205 lncRNA downstream 7539 99166972 ~ 99167250 (-) True G1132565
TU1289202 lncRNA downstream 12654 99161810 ~ 99162135 (-) True G1132562
TU1289201 lncRNA downstream 16128 99157971 ~ 99158661 (-) True G1132561
TU1289222 lncRNA upstream 4567 99182045 ~ 99182512 (-) True LOC110538845
TU1289232 lncRNA upstream 9729 99187207 ~ 99187957 (-) True G1132574
TU1289265 lncRNA upstream 80760 99258238 ~ 99293690 (-) True G1132595
TU1289269 lncRNA upstream 89133 99266611 ~ 99269289 (-) True G1132599
TU1289275 lncRNA upstream 103972 99281450 ~ 99281916 (-) True G1132605
XM_021625818.2 mRNA downstream 82544 99090621 ~ 99092245 (-) False LOC110538840
XM_036939569.1 mRNA downstream 115948 99053284 ~ 99058841 (-) False LOC118937838
XR_005035258.1 mRNA downstream 129169 99042019 ~ 99045620 (-) True LOC110538834
XM_036939473.1 mRNA downstream 129170 99042019 ~ 99045619 (-) False LOC110538834
XM_036939474.1 mRNA downstream 129917 99042019 ~ 99044872 (-) False LOC110538834
XM_021625826.2 mRNA upstream 608 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA upstream 608 99178086 ~ 99183106 (-) False LOC110538845
XM_036939487.1 mRNA upstream 41136 99218614 ~ 99231888 (-) True LOC110517411
XM_036939488.1 mRNA upstream 174051 99351529 ~ 99380971 (-) False LOC110538879
XM_036939490.1 mRNA upstream 361830 99539308 ~ 99556218 (-) False LOC110538877
TU1289204 other downstream 8182 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 82551 99091716 ~ 99092238 (-) True LOC110538840
TU1288947 other downstream 115533 99053504 ~ 99059256 (-) True LOC118937838
TU1288904 other downstream 164677 99006627 ~ 99010112 (-) True G1132328
TU1288236 other downstream 790974 98382970 ~ 98383815 (-) True G1131863
TU1289219 other upstream 4483 99181961 ~ 99182915 (-) False LOC110538845
TU1289296 other upstream 149034 99326512 ~ 99326924 (-) True G1132625
TU1289696 other upstream 662961 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 662961 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 746582 99924060 ~ 99925126 (-) False G1133028

Expression Profile