RNA id: TU1289300


Basic Information

Item Value
RNA id TU1289300
length 967
lncRNA type sense_over
GC content 0.49
exon number 4
gene id G1132628
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99328948 ~ 99529652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacataatttacatatgaagcatttgtgtttagtgagtccaccagatcagaggtagtagggatgaccagggatgttctctgtttagtgagtccactagatcagaggtagtagagatgaccagggatgttctctgtttagtgagtccgctagatcagaggtagtagagatgaccagggatgttctctgtttagtgagtccgctagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccgctagatcagaggtagtagagatgaccagggatgttctctgtttagtgagtccgctagatcagaggtagtagagatgaccagggatgttctctgtttagtgagtctgccagatcagaggcagtagagatgaccagggatgttctctgtttagtgagtccaccagatcagaggtagtagagatgaccagggatgttctctgtttagagagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagagagtcctccagatcagaggcagtagagatgaccagggatgttctctgtttagtgagtctgccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagagatgaccagggatgttctctgtttagtgagtccgccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccaccagatcagaggtagtagagatgaccagggatgttctctgtttagtgagtctgccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagagatgaccagggatgttctctgtttagtgagtccgccagatcagaggcagtagagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289298 lncRNA downstream 862 99327849 ~ 99328086 (-) True G1132627
TU1289297 lncRNA downstream 1528 99327189 ~ 99327420 (-) True G1132626
TU1289291 lncRNA downstream 14344 99314250 ~ 99314604 (-) True G1132620
TU1289289 lncRNA downstream 15354 99312399 ~ 99313594 (-) False G1132619
TU1289290 lncRNA downstream 15757 99312399 ~ 99313191 (-) True G1132619
TU1289409 lncRNA upstream 2603 99532255 ~ 99532556 (-) True G1132713
TU1289412 lncRNA upstream 7124 99536776 ~ 99538230 (-) True G1132716
TU1289431 lncRNA upstream 19904 99549556 ~ 99550908 (-) False G1132728
TU1289432 lncRNA upstream 19904 99549556 ~ 99552975 (-) True G1132728
TU1289436 lncRNA upstream 29458 99559110 ~ 99559352 (-) True G1132732
XM_036939487.1 mRNA downstream 97060 99218614 ~ 99231888 (-) True LOC110517411
XM_021625826.2 mRNA downstream 145842 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA downstream 145842 99178086 ~ 99183106 (-) False LOC110538845
XM_021625818.2 mRNA downstream 236703 99090621 ~ 99092245 (-) False LOC110538840
XM_036939569.1 mRNA downstream 270107 99053284 ~ 99058841 (-) False LOC118937838
XM_036939490.1 mRNA upstream 9656 99539308 ~ 99556218 (-) False LOC110538877
XM_036939489.1 mRNA upstream 9656 99539308 ~ 99556315 (-) True LOC110538877
XM_036939577.1 mRNA upstream 34080 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA upstream 74099 99603751 ~ 99604658 (-) True LOC118937859
XM_036939642.1 mRNA upstream 109987 99639639 ~ 99672638 (-) True LOC110485298
TU1289296 other downstream 2024 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 146033 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 153040 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 162341 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 236710 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 310787 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 310787 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 394408 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 394408 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 680805 100210457 ~ 100211148 (-) True G1134054

Expression Profile