RNA id: TU1289313


Basic Information

Item Value
RNA id TU1289313
length 530
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1132629
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99331848 ~ 99332416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAAAAGGACAACAACTTTCTCATGATGGTCACCATGGCTTTGTGATTGGCTGGtgtattgttggtctgtgtattatagtgaggtttggctggtgtattgttggtctgtgtattatagtgaggtttggctggtgtattgttggtctgtgtattatagtgaggtttggctggtgtattgttggtctgtgtattatagtgaggtttggttggtgtattgttggtctgtgtattatagtgaggtttggctggtgtattgttggtctgtgtattatagtgaggtttggctggtgtatagttggtctgtgtattatagtgaggtttggctggtgtattgttggtctgtgtattatAGTGAGGTTTGGCTGGTGCGTCTGTCTTGAAGTTCAGCCTCACTGCCATTCAGATAGGAACAGTTCAGTAGAGGGTTAATGGAAGTAAATTAAGTTTACCCTCCTTTTGAGgacaaaatgtattaaaaagaagCGCTACTTTTTTTCCACGGCGACAGGCAATCAGAGTTGACCCacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289304 lncRNA downstream 1980 99328948 ~ 99329868 (-) True G1132628
TU1289298 lncRNA downstream 3762 99327849 ~ 99328086 (-) True G1132627
TU1289297 lncRNA downstream 4428 99327189 ~ 99327420 (-) True G1132626
TU1289291 lncRNA downstream 17244 99314250 ~ 99314604 (-) True G1132620
TU1289290 lncRNA downstream 18657 99312399 ~ 99313191 (-) True G1132619
TU1289325 lncRNA upstream 19589 99352005 ~ 99352334 (-) True LOC110538879
TU1289332 lncRNA upstream 23841 99356257 ~ 99356681 (-) True G1132643
TU1289333 lncRNA upstream 24761 99357177 ~ 99358063 (-) False G1132644
TU1289334 lncRNA upstream 24761 99357177 ~ 99357792 (-) True G1132644
TU1289338 lncRNA upstream 43641 99376057 ~ 99376707 (-) True G1132648
XM_036939487.1 mRNA downstream 99960 99218614 ~ 99231888 (-) True LOC110517411
XM_021625826.2 mRNA downstream 148742 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA downstream 148742 99178086 ~ 99183106 (-) False LOC110538845
XM_021625818.2 mRNA downstream 239603 99090621 ~ 99092245 (-) False LOC110538840
XM_036939569.1 mRNA downstream 273007 99053284 ~ 99058841 (-) False LOC118937838
XM_036939488.1 mRNA upstream 19113 99351529 ~ 99380971 (-) False LOC110538879
XM_036939490.1 mRNA upstream 206892 99539308 ~ 99556218 (-) False LOC110538877
XM_036939489.1 mRNA upstream 206892 99539308 ~ 99556315 (-) True LOC110538877
XM_036939577.1 mRNA upstream 231316 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA upstream 271335 99603751 ~ 99604658 (-) True LOC118937859
TU1289296 other downstream 4924 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 148933 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 155940 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 165241 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 239610 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 508023 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 508023 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 591644 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 591644 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 878041 100210457 ~ 100211148 (-) True G1134054

Expression Profile