RNA id: TU1289354


Basic Information

Item Value
RNA id TU1289354
length 626
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1132662
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99413939 ~ 99414972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactaatcactgtaaagctgcagtaactctgtagtactaatcactgtaaagctgtagtaactatgtagtactaatcactgtatagctgtagtaactatgtagtactaatcactgtaaagctgtagtaactctgtagtactaatcactgtaaagctgtagtaactatgtagtactaatcactgtatagctgtagtaactatgtagtactaatcactgtaaagctgcagtaactctgtagtactaatcactgtaaagctgcagtaactatgtagtactaatcactgtaaagctgcagtaactatatagtactaatcactgtaaagctgcagtaactctgtagtactaatcactgtaaagctgcagtaactatgtagtactaatcactgtaaagctgcagtaactatgtagtactaatcactgtaaagctgcagtaactctgtagtactaatcactgtaaagctgcagtaactatatagtactaatcactgtaaagctgTACTAACTATatagtactaatcactgtaaagctgcagtaactctgtagtactaatcactgtaaagctgcAGTAACTATGTAGTACTGATCACTGTAAAGCTGCAGTAACTATatagtactaatcactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289346 lncRNA downstream 24593 99386588 ~ 99389346 (-) True G1132656
TU1289338 lncRNA downstream 37232 99376057 ~ 99376707 (-) True G1132648
TU1289333 lncRNA downstream 55876 99357177 ~ 99358063 (-) False G1132644
TU1289334 lncRNA downstream 56147 99357177 ~ 99357792 (-) True G1132644
TU1289332 lncRNA downstream 57258 99356257 ~ 99356681 (-) True G1132643
TU1289360 lncRNA upstream 12349 99427321 ~ 99428796 (-) True G1132667
TU1289364 lncRNA upstream 14972 99429944 ~ 99430707 (-) True G1132669
TU1289374 lncRNA upstream 32818 99447790 ~ 99448616 (-) True G1132679
TU1289380 lncRNA upstream 42113 99457085 ~ 99457630 (-) True G1132685
TU1289409 lncRNA upstream 117283 99532255 ~ 99532556 (-) True G1132713
XM_036939488.1 mRNA downstream 32968 99351529 ~ 99380971 (-) False LOC110538879
XM_036939487.1 mRNA downstream 182051 99218614 ~ 99231888 (-) True LOC110517411
XM_021625826.2 mRNA downstream 230833 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA downstream 230833 99178086 ~ 99183106 (-) False LOC110538845
XM_021625818.2 mRNA downstream 321694 99090621 ~ 99092245 (-) False LOC110538840
XM_036939490.1 mRNA upstream 124336 99539308 ~ 99556218 (-) False LOC110538877
XM_036939489.1 mRNA upstream 124336 99539308 ~ 99556315 (-) True LOC110538877
XM_036939577.1 mRNA upstream 148760 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA upstream 188779 99603751 ~ 99604658 (-) True LOC118937859
XM_036939642.1 mRNA upstream 224667 99639639 ~ 99672638 (-) True LOC110485298
TU1289296 other downstream 87015 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 231024 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 238031 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 247332 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 321701 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 425467 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 425467 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 509088 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 509088 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 795485 100210457 ~ 100211148 (-) True G1134054

Expression Profile