RNA id: TU1289380


Basic Information

Item Value
RNA id TU1289380
length 518
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1132685
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99457085 ~ 99457630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCAGCTAGAACCCTGACCATCCGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCTTCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCTTCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGAACATCAGACAGATCAGCTAGAACCCTGACCTTCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGGGCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAACCCTGACCATCAGACAGATCAGCTAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289374 lncRNA downstream 8469 99447790 ~ 99448616 (-) True G1132679
TU1289364 lncRNA downstream 26378 99429944 ~ 99430707 (-) True G1132669
TU1289360 lncRNA downstream 28289 99427321 ~ 99428796 (-) True G1132667
TU1289354 lncRNA downstream 42113 99413939 ~ 99414972 (-) True G1132662
TU1289346 lncRNA downstream 67739 99386588 ~ 99389346 (-) True G1132656
TU1289409 lncRNA upstream 74625 99532255 ~ 99532556 (-) True G1132713
TU1289412 lncRNA upstream 79146 99536776 ~ 99538230 (-) True G1132716
TU1289431 lncRNA upstream 91926 99549556 ~ 99550908 (-) False G1132728
TU1289432 lncRNA upstream 91926 99549556 ~ 99552975 (-) True G1132728
TU1289436 lncRNA upstream 101480 99559110 ~ 99559352 (-) True G1132732
XM_036939488.1 mRNA downstream 76114 99351529 ~ 99380971 (-) False LOC110538879
XM_036939487.1 mRNA downstream 225197 99218614 ~ 99231888 (-) True LOC110517411
XM_021625826.2 mRNA downstream 273979 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA downstream 273979 99178086 ~ 99183106 (-) False LOC110538845
XM_021625818.2 mRNA downstream 364840 99090621 ~ 99092245 (-) False LOC110538840
XM_036939490.1 mRNA upstream 81678 99539308 ~ 99556218 (-) False LOC110538877
XM_036939489.1 mRNA upstream 81678 99539308 ~ 99556315 (-) True LOC110538877
XM_036939577.1 mRNA upstream 106102 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA upstream 146121 99603751 ~ 99604658 (-) True LOC118937859
XM_036939642.1 mRNA upstream 182009 99639639 ~ 99672638 (-) True LOC110485298
TU1289296 other downstream 130161 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 274170 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 281177 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 290478 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 364847 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 382809 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 382809 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 466430 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 466430 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 752827 100210457 ~ 100211148 (-) True G1134054

Expression Profile