RNA id: TCONS_00041306


Basic Information

Item Value
RNA id TCONS_00041306
length 4890
RNA type mRNA
GC content 0.52
exon number 35
gene id XLOC_021007
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 14363952 ~ 14739491 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgttcctgctgGCCAGGCTTCCGTCTGAAACATGACGGCAGGATGTGCATCGACGTGGACGAGTGTTCCGAGCAGTTTCCCTGCAGTCAGCAGTGCGTCAACACATACGGCTCCTTCCACTGCCTGTGTGCCGACGGATACCAGCGGCCCGCCAGCAACACCCACAGCTGCAGGTCTCTCTCAGcgGAGCAGCCTTTTCTTATCCTTGCCGACCATCATGAAATCAGAAAGATCAGTCTGGATGGATCAAACTATACTCTTTTGAAGCAGGGACTCAGTAATGTCATCTCTCTAGACTTTGACTCCAGGAAAGAGTTGATCTATTGGATTGACACTAGCAGACCCAGCGGACGCAGAATCAACAGAATGCGCCTCAATGGAAGCGACCTCAAGGTGGTTCACAGGACATCTGTCCCCAGTGCTCTCGCGGTCGACTGGATCGGCAAGAACTTGTATTGGTGTGACGGCGAGAGAAAGACCCTCGAGGTGGCGAAAGCTAATGGACTCTACCCCACTGTACTGCTGAGGACTGGATTGAGAAATCCAACTGCTCTGGCTCTCGACACTCTGACAGGGTATGTGTTCTGGATCGACTGTTGTGAACAGCCCCAAATTGGACGGATCGGGATGGACGGCAGCAAGCCACGCGTCATAATTGATACAGAAATACGCTCTCCTTCAGCTTTGACCATTGACCACGTCAACAAAAGGATTTACTGGGCTGACGAGAACCATATCTTATTTGCAAATATAGACGGTACCAAAAGACACAAAGTCCCTATACAAGACATAGGTGGAGTAACGGGTCTCACATTGTTTGAGGACTTCATTTACTGGAGTGACCAGAAGTCCAAAACCCTCAGTCGCTCTCACAAGACGTCGGGCGGTAAACAAACCGAGCTCCTCAGCTCATGGCAAACCATTCGAGACATTCAAGTCTACCATCCGCTCCGACAGCCTGACGGTATTACAGCGGGAAGCTTCTTGGATAAGTCTACAGTTGACTGTTTGGTGCCTAAACATCAGTGCCAGGTGACTAATGGAGGGTGCAGCCACCTCTGCCTGCTTTCGCCTGGAGGGGGATACAAGTGTGCTTGCCCTACGCACTTCTACCTGGCAAATGACAACAAAACCTGTCTGTCTAACTGCACCGCCAGCCAGTTCCGCTGCGGTACGGATGAGTGCATTCCCTTCTGGTGGAAATGTGACACAGTGGACGACTGTGGAGATGGATCTGACGAGCCGGCAGACTGCCCGGAGTTTAAATGTCAGCCCGGCAGGTTTCAATGCGGGACAGGTCTGTGTGCTCTTCCTCCCTTCATCTGCGATGGAGAGAACGACTGCGGAGACAACTCGGATGAAGCCAACTGTGACTCATATATCTGCCTGTCGGGTCAGTTTAAGTGCACACACCGGCAGAAGTGCATCCCTATAAACCTGCGCTGTAATGGACAAGACGACTGCGGTGACGGGGAAGATGAAACCGACTGCCCTGAAAACACCTGCTCTCCATCCCAGTTCCAGTGCAAGTCTACAATGCACTGCATCTCCAAGCTGTGGGTTTGCGATGAAGATCCCGACTGCGCCGACGGCTCCGACGAGGCCAACTGCGATGAAAAGACATGCGGACCCCATGAATTCCGCTGCAAGGACAACAACTGCATCCCGGACCACTGGAGGTGTGATGGACAGAGCGACTGCAGCGACAATTCAGATGAGGAGAACTGCAAGCCAGTTACATGCAACTCTAAAAACTTCATCTGCGCCAATGGAGAATGTATTTCCTCACGTTTCCGGTGCGACGGCGACTTCGACTGCACTGATAACTCAGACGAGAGGGGCTGTGAAAGCCACTGCTCCGAGGATCAGTTCCAGTGTCTGAATCATCTCTGCATATCGGTCAAATGGCTTTGCGATGGACAGGAAGACTGTAAAACCGGGGAAGATGAGGCCAACTGCAGCCCTGCCAACACCGCCATGACAGCTCGGCCGACGGCTTGCGGTCTGAacgagtatgtgtgtgttggaGGAGGCTGTGTTTTGGCTGCTCAGCGCTGCGATGGACAGAACGACTGCGCAGATGGGTCAGATGAGgtgGACTGTCTCAGCGAGTGTAAAGAGGACGAGTTTCTATGTCGTAATCGAGCTCACTGTATTCCTGCACGCTGGAGGTGTGACAGAGTCTTCGATTGCCTCGATCAGAGCGATGAGGATAACTGTGACCACGGGTCTCTGTCGTGTCGTGCAGATGAGTTTGTGTGTAATAATACACTGTGTAAGCTGCTGGTTTGGCTGTGTGATGGTGAGGACGACTGCGGAGACAACTCTGATGAAGATGCGCACATGTGCGAAAAGCTGCCTTGTCCCCCAAACCGTCCGTTCCGCTGCAGAAATGACCGAGTGTGTTTGCGATCTGAGCAGATCTGCAACGGTGCCAATGACTGTGGTGACAATTCAGACGAAGACCACTGTGTGGATGTGTTGAAGAAGCCCAGGCCATGTGGAAAGACTGAATTTGCTTGCGCAAACCACCGCTGTATAGCAGACGAGCTGCAGTGTGATCTATTTGACGATTGTGAAGACGGTTCAGATGAGCGCGACTGCAAGGCATACTTGTGTGGAGACGACGCTTTCTGTAATCATAACAAAACTCCCTCCGTCTGCCAGTGCAAAGAAGGCTTTCAGAGGAACCAGAAGAACAGGCAATGTGAAGAGGTGAACGAGTGTCTGCTTTTCGGTATCTGTTCTCAGTACTGCACCAACAGCAAGGGCTCATACAGGTGCACCTGTGACCGCAACTTCAAGGAGATCCATGGCGAGTGCATCACCAAAGGTCCAGAAGATCAGGTCCTCTACGTGGCGAATGACACTGAAATCCGCAGTTTTGTGTATCCCTACAACCAGACTCACGGGCACACTCAGCTCGCCCGGATCTCCGACAGCGCTCGTATCATTGGCATGGACGCACTTTTCCACCATCACAAGTTTGTTTGGGCCACTCAGTTTAATCCTGGCGGGATGTTTTACAAAGACCTGCAGGACAGGAGTCCAGACACAACAAACAGCGGCGTCATATGTCCAGATTTTCGGAGGCCCAGAGACATTTCAGCTGACTGGGTGACGGGAAACCTATACTGGACAGATCATTCGCGAATGCACTGGTTCAGCTACTACACGGCACACTGGCGGAGACTTCGATACTCCATCAATGTGGGACAGCTAGGAGGCCCAAACTGCACACGTCTCATCACCGATATTGACGGAGAGCCTTTCGCCATCACTGTTAACCCTATACGGGGGATGGTGTATTGGACCGTAATCGGCGATCACTCTCACATTGAAGAGGCTGCTATGGACGGGTCGATGCGTCGTGTTTTGATCACAAGGAATTTGCGGAGACCGACAGgacTCGCGATTGATTATTACAACCAGCGTCTGTACTGGGCAGACTCTGAACTCTCTCAGATCGGGAGCGTGCGCTTCGATGGCTCTGATTCACTGGTGGCCATCAGCAGTCGACACGGCATCTCTCAGCCCTTCCGTATCGACCTGTTTGAGGACTACATCTACGGGGTGAGCATGAAACACGACATCTTCAGGGTTCATAAATACGGGAAGCTGCCCGCCGAGAGGCTCAGTCTAGGAGTGGAGAGATCATCCAGTGTCCTGGTTTTCCATCGATACAAACAGCAGGAAGtGTCGAACCCGTGCGCGCAGATGAGTTGTACGTTCCTGTGTCTTCTGAATCCCAGCGGGGCTCGATGTGTGTGTCCTGAGGGGAAGATTCTGCTCAACAGGACCTGCACAGACACCAACATCTCAGGAGATCTGTGTCGTCCTGCCTGTGAGAATGGAGGTCGGTGTATCACTAATGAACGAGGGGAATCCCGCTGTTTTTGTTGGCCAAATTACTCTGGTGAACGCTGTGAAATCAGCCACTGTAAAGACTTCTGTCTTAATGGAGGAACCTGCACTGGATCTCCACTAGGGAAGGCCACGTGTCGCTGTGCTCTGGGCTTCAGTGGTTCTCTGTGTGAGCAAAGGTTGTGTGATGGTTTCTGTCTGAATGGAGGCTCCTGTGACGTGACTCTGGGAAATCAGCCTGTGTGTCAGTGTCCAGCTGAGTACACCGGAGAGCGCTGTCAACAACATATTTGCCATCATTATTGCGCACACTCTAAAGGCTGCACACTGTCCAGCTCGGGACACGTGGAATGTGTTTGTCCCACAAGATACGAGGGCTCCAAATGTGAGACAGACCGATGTGTTCGCTGCCGAGGAGCTCCATGTATCGTAGATGAAGAGACTGGAGATGTCGCCTGCAACTGTACGAATGGCAGGATTGCAGCCAGCTGTCAGCTGTGTGACGGATACTGTTATAACGGAGGAACCTGCCACCTCGACTCTGAAACTGGCCTGCCGTTCTGTCAGTGCTCTGGAAACTGGTCAGGAACGCAGTGTGAAAGACCTGCAACCAAGACCAACCGCTTGGAAAATGTCAGCGGGAGAAGTATTGCCATAATAGTGCCTCTAGTTCTTCTCGTATGCATCATCACCGCTGTTACAGTGGGAATCCTCATTTGCAAAAGGTGTCGAAGAGGTAAGCAGGTTCAGCGGCAGCCCATGGCCAATGGAGGCTTGAACGTGGAGATCGGGAATCCGTCCTATAACATGTATGAAGTTGAACACGACAATCACGTAGACGTCGGAAGCTTTCTTCACCCCAGCTTCACACTTGACCCTCACAAGGCTATGAACTACTCCAACCCCATCTACTCAAAGATGTACCATGACGGACAACACTGTCGAAAGCCCGTCATCAACCTCGACATGAGACGCGATTTACTCCCAAAGAGACTGGACACGACCATTCGAGAAACGGCAGCATAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-608 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LRP1B (LDL receptor related protein 1B).

Ensembl:

ensembl_id ENSDART00000135768

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042364 lncRNA downstream 29817 14332450 ~ 14334135 (-) True XLOC_021004
TCONS_00042363 lncRNA downstream 62079 14299800 ~ 14301873 (-) True XLOC_021002
TCONS_00042362 lncRNA downstream 65350 14275746 ~ 14298602 (-) False XLOC_021001
TCONS_00041301 lncRNA downstream 68849 14275823 ~ 14295103 (-) True XLOC_021001
TCONS_00042361 lncRNA downstream 670325 13668985 ~ 13693627 (-) True XLOC_020992
TCONS_00042365 lncRNA upstream 289071 14764998 ~ 14773881 (-) False XLOC_021009
TCONS_00041945 lncRNA upstream 297809 14773736 ~ 14781192 (-) False XLOC_021009
TCONS_00042366 lncRNA upstream 299056 14774983 ~ 14786979 (-) False XLOC_021009
TCONS_00042367 lncRNA upstream 299056 14774983 ~ 14787062 (-) False XLOC_021009
TCONS_00041946 lncRNA upstream 306380 14782307 ~ 14785082 (-) False XLOC_021009
TCONS_00041304 mRNA downstream 2930 14350839 ~ 14361022 (-) True XLOC_021006
TCONS_00041303 mRNA downstream 17377 14338178 ~ 14346575 (-) True XLOC_021005
TCONS_00041302 mRNA downstream 54135 14304677 ~ 14309817 (-) True XLOC_021003
TCONS_00041300 mRNA downstream 101837 14260154 ~ 14262115 (-) True XLOC_021000
TCONS_00041299 mRNA downstream 108293 14251343 ~ 14255659 (-) False XLOC_021000
TCONS_00041308 mRNA upstream 4591 14480518 ~ 14739491 (-) True XLOC_021007
TCONS_00041311 mRNA upstream 533241 15009168 ~ 15010688 (-) True XLOC_021011
TCONS_00041312 mRNA upstream 775600 15251527 ~ 15280638 (-) True XLOC_021014
TCONS_00041313 mRNA upstream 908529 15384456 ~ 15385442 (-) True XLOC_021015
TCONS_00041314 mRNA upstream 953172 15429099 ~ 15437242 (-) True XLOC_021017
TCONS_00041297 other downstream 116710 14223121 ~ 14247242 (-) False XLOC_021000
TCONS_00041293 other downstream 274890 14088353 ~ 14089062 (-) True XLOC_020997
TCONS_00041290 other downstream 344230 14019604 ~ 14019722 (-) True XLOC_020996
TCONS_00041289 other downstream 417885 13945953 ~ 13946067 (-) True XLOC_020995
TCONS_00041286 other downstream 647550 13715455 ~ 13716402 (-) True XLOC_020993
TCONS_00041309 other upstream 217185 14693112 ~ 14693228 (-) True XLOC_021008
TCONS_00041310 other upstream 289071 14764998 ~ 14773300 (-) False XLOC_021009
TCONS_00041327 other upstream 1222547 15698474 ~ 15699853 (-) False XLOC_021022
TCONS_00041329 other upstream 1230135 15706062 ~ 15717893 (-) False XLOC_021023
TCONS_00041332 other upstream 1305681 15781608 ~ 15781724 (-) True XLOC_021027

Expression Profile

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