RNA id: TU1289412


Basic Information

Item Value
RNA id TU1289412
length 534
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1132716
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99536776 ~ 99538230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCTGATGGCTATAGGATGACccagtgttgtctcagtgttctgatgactatAGGATGACCCGGTGttgcctcagtgttctgatgactataggatgacctagtgttgtctcagtgttctgatgactataggatgacctagtgttgtctcagtgttctgatgactatAGCATGACccagtgttgtctcagtgttctgatgactatAGGATGACCCAGTGTTGTCTCAGTGGTCTGATGACTATAGGATGACCCAGTGTTGTCTCAGTGGTCTGATGACTATAGGAGGATccagtgttgtctcagtgttctgatgacctagtgttgtctcagtgttctgatgactataggatgacccagtgttgtctcagtggtctgatgactataggatgacctagtgttgtctcagtgttctgatgactgTAGGAGGATCTAGTGTTGTCTCAGTGGTCTGTAGCTCATCCATCATGACTTAAGTTGGACAGTTGTACTTCACATGGTTGTGGCCACGACCCcaagtctttgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289409 lncRNA downstream 4220 99532255 ~ 99532556 (-) True G1132713
TU1289300 lncRNA downstream 7124 99328948 ~ 99529652 (-) False G1132628
TU1289380 lncRNA downstream 79146 99457085 ~ 99457630 (-) True G1132685
TU1289374 lncRNA downstream 88160 99447790 ~ 99448616 (-) True G1132679
TU1289364 lncRNA downstream 106069 99429944 ~ 99430707 (-) True G1132669
TU1289431 lncRNA upstream 11326 99549556 ~ 99550908 (-) False G1132728
TU1289432 lncRNA upstream 11326 99549556 ~ 99552975 (-) True G1132728
TU1289436 lncRNA upstream 20880 99559110 ~ 99559352 (-) True G1132732
TU1289437 lncRNA upstream 21823 99560053 ~ 99560258 (-) True G1132733
TU1289702 lncRNA upstream 28099 99566329 ~ 99566862 (-) True G1132902
XM_036939488.1 mRNA downstream 155805 99351529 ~ 99380971 (-) False LOC110538879
XM_036939487.1 mRNA downstream 304888 99218614 ~ 99231888 (-) True LOC110517411
XM_021625826.2 mRNA downstream 353670 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA downstream 353670 99178086 ~ 99183106 (-) False LOC110538845
XM_021625818.2 mRNA downstream 444531 99090621 ~ 99092245 (-) False LOC110538840
XM_036939490.1 mRNA upstream 1078 99539308 ~ 99556218 (-) False LOC110538877
XM_036939489.1 mRNA upstream 1078 99539308 ~ 99556315 (-) True LOC110538877
XM_036939577.1 mRNA upstream 25502 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA upstream 65521 99603751 ~ 99604658 (-) True LOC118937859
XM_036939642.1 mRNA upstream 101409 99639639 ~ 99672638 (-) True LOC110485298
TU1289296 other downstream 209852 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 353861 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 360868 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 370169 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 444538 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 302209 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 302209 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 385830 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 385830 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 672227 100210457 ~ 100211148 (-) True G1134054

Expression Profile