RNA id: TU1289432


Basic Information

Item Value
RNA id TU1289432
length 805
lncRNA type intronic
GC content 0.45
exon number 3
gene id G1132728
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99549556 ~ 99552975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagtatcctgtccactgtgtggtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactggttcagtcatctggtatatagtatcctgtccactgtgtggtactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactggttcagtcatctggtatatagtatcctgtccactgtgtggtactgtaacactggttcagtcatctggtatatagtatcctgtccactgtgtggtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtagtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtagtactgtaacactggttcagtcatctggtatgtagtatcctgtccactgtgtggtactggttcagtcatctggtatatagtatcctgtccactgtgtggtcatgtaacactggttcagtcatctggtatgtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289412 lncRNA downstream 11326 99536776 ~ 99538230 (-) True G1132716
TU1289409 lncRNA downstream 17000 99532255 ~ 99532556 (-) True G1132713
TU1289380 lncRNA downstream 91926 99457085 ~ 99457630 (-) True G1132685
TU1289374 lncRNA downstream 100940 99447790 ~ 99448616 (-) True G1132679
TU1289364 lncRNA downstream 118849 99429944 ~ 99430707 (-) True G1132669
TU1289436 lncRNA upstream 6135 99559110 ~ 99559352 (-) True G1132732
TU1289437 lncRNA upstream 7078 99560053 ~ 99560258 (-) True G1132733
TU1289702 lncRNA upstream 13354 99566329 ~ 99566862 (-) True G1132902
TU1289686 lncRNA upstream 15803 99568778 ~ 99611462 (-) True LOC118937841
TU1289708 lncRNA upstream 27928 99580903 ~ 99589632 (-) True G1132908
XM_036939488.1 mRNA downstream 168585 99351529 ~ 99380971 (-) False LOC110538879
XM_036939487.1 mRNA downstream 317668 99218614 ~ 99231888 (-) True LOC110517411
XM_021625826.2 mRNA downstream 366450 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA downstream 366450 99178086 ~ 99183106 (-) False LOC110538845
XM_021625818.2 mRNA downstream 457311 99090621 ~ 99092245 (-) False LOC110538840
XM_036939577.1 mRNA upstream 10757 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA upstream 50776 99603751 ~ 99604658 (-) True LOC118937859
XM_036939642.1 mRNA upstream 86664 99639639 ~ 99672638 (-) True LOC110485298
XM_036939641.1 mRNA upstream 276455 99829430 ~ 100834884 (-) False LOC110539068
XR_005035282.1 mRNA upstream 297181 99850156 ~ 99857256 (-) False LOC110538873
TU1289296 other downstream 222632 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 366641 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 373648 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 382949 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 457318 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 287464 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 287464 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 371085 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 371085 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 657482 100210457 ~ 100211148 (-) True G1134054

Expression Profile