RNA id: TU1289708


Basic Information

Item Value
RNA id TU1289708
length 569
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1132908
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99580903 ~ 99589632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accggtacctcctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgaaccagtaccccctgtatatagcctccacattgactctgtaccggtacctcctgtatataatctccacattgactctgtaccagtacccctgtataaagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgaaccggtaccccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgaaccagtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcccccacattgactctgtaccagtaccccctgtatatagcccccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289702 lncRNA downstream 14041 99566329 ~ 99566862 (-) True G1132902
TU1289437 lncRNA downstream 20645 99560053 ~ 99560258 (-) True G1132733
TU1289436 lncRNA downstream 21551 99559110 ~ 99559352 (-) True G1132732
TU1289432 lncRNA downstream 27928 99549556 ~ 99552975 (-) True G1132728
TU1289431 lncRNA downstream 29995 99549556 ~ 99550908 (-) False G1132728
TU1289712 lncRNA upstream 1777 99591409 ~ 99592884 (-) True G1132912
TU1289718 lncRNA upstream 27036 99616668 ~ 99661202 (-) True G1132918
TU1289721 lncRNA upstream 34174 99623806 ~ 99624613 (-) True G1132921
TU1289729 lncRNA upstream 54457 99644089 ~ 99644786 (-) True G1132929
TU1289701 lncRNA upstream 67239 99656871 ~ 99752959 (-) True G1132901
XM_036939489.1 mRNA downstream 24588 99539308 ~ 99556315 (-) True LOC110538877
XM_036939490.1 mRNA downstream 24685 99539308 ~ 99556218 (-) False LOC110538877
XM_036939488.1 mRNA downstream 199932 99351529 ~ 99380971 (-) False LOC110538879
XM_036939487.1 mRNA downstream 349015 99218614 ~ 99231888 (-) True LOC110517411
XR_005035259.1 mRNA downstream 397797 99178086 ~ 99183106 (-) False LOC110538845
XM_036939637.1 mRNA upstream 14119 99603751 ~ 99604658 (-) True LOC118937859
XM_036939642.1 mRNA upstream 50007 99639639 ~ 99672638 (-) True LOC110485298
XM_036939641.1 mRNA upstream 239798 99829430 ~ 100834884 (-) False LOC110539068
XR_005035282.1 mRNA upstream 260524 99850156 ~ 99857256 (-) False LOC110538873
XM_036939601.1 mRNA upstream 357104 99946736 ~ 99965247 (-) True LOC110539071
TU1289296 other downstream 253979 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 397988 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 404995 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 414296 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 488665 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 250807 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 250807 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 334428 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 334428 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 620825 100210457 ~ 100211148 (-) True G1134054

Expression Profile