RNA id: TU1289701


Basic Information

Item Value
RNA id TU1289701
length 2356
lncRNA type read_through
GC content 0.43
exon number 3
gene id G1132901
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99656871 ~ 99752959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGTATAACAATTCAATAAtgatgagacaggagacaggaatCAGTTCAACCATTTATCTGGAACGTGATCATCTCTTCACATACAAACTCCCATGATGCTCTGCAGCACAACCCCAATATACAACAAATACATATAAATTAAGTAAATGGACACTAAACAAAACTCATAGAGGAATTGAAATGTTCAGTTCTAGAAAGTAGGGCTATGGGATAGAGTCAGAAAGGTCATTATGTTTGATAGCTGGTTACAGAGGTGACATAACAAGCATAAGGTCCATTATAACACAGTGAGGTAGAGGTGGGAGCTAAAAGCAGACATGGACAGTGAGACGGTGTGAGGAGGTCAGGGGTCAAACACTAGATCAGGACATGTAGAAATGGCAGTGCTGGAAATAGACACAGACACATTGTGATCATGGCTCAGACCTGACCTGAGACACCCAAACAGAAGATGCCATACCAAAGTCCTGACCTGAGACACCCCAACAGAAGATGCCATACCAAAGTCCTGTCCTGAGACACCCAAACAGAAGATGCCATACCAAAGTCCTGTCCTGAGACACCCAAACAGAAGATGCCATACCAAAGTCCTGACCTGAGACACCCAAACAGAAGATGCCATAGCAAAGTCCTGTCCTGAGACACCCAAACagaagatgtcataacaaagtccTGACCTGAGACACCCAAACAGAAGATGCCATAACAAAGTCCTGTCCTGAGACACCCAAACAGAAGATGTCATAGCAAAGTCCTGTCCTGAGACACCCAAACAGAAGATGTCATAGCAAAGTCCTGTCCTGAGACACCCAAACagaagatgtcataacaaagtccTGACCTGAGACACCCAAACagaagatgtcataacaaagtccTGACCTGAGACACCCAAACAGAAGATGCCATAACAAAGTCCTGTCCTGAGACACCCAAACAGAAGATGCCATAGCAAAGTCCTGACCTGAGACACCCAAACAGAAGATGTCATAGCAAAGTCCTGTCCTGAGACACCCAAACagaagatgtcataacaaagtccTGACCTGAGACACCCAAACAGAAGATGCCATAACAAAGTCCTGACCTGAGACACCCAAACAGAAGATGTCATAGCAAAGTCCTGTCCTGAGACACCCAAACAGAAGATGTCATACCAAAGTCCTGACCTGAGACACCCAAACAGAAGATGTCATAGCAAAGTCCTGTCCTGAGACACCCAAACAGAAGATGTCATACCAAAGTCCTGTCCAGTAGGCTGTATGGGATTTCCTTTCATCAAAAAACAAACATGGAAATGAGGCATCTGTCAATAAAAAGTTACTTTAGAGCTTTAGTGAAAGGATGGAATGACTTAGTGTTACTAACATTTAGTGAAAGGATGGAATGACTTAGTGTTACTATCATTTAGTGAAAGGATGTAATGACTTAGTGTTACTAACATCATATCAAACATTAAACAATTAGAACTGATTTTTTAATTATACTGAACTaaattataaacgcaacaatttcaaagattttactgagttcatataagaaaatctgttaattgaaataacttcattagaccctaatctatggatttcacacgactgggaatacaggttggtcacagataccttaatataaaagtaggagcgtggatcagaaaaccagtcagtatctggtgggacCACTTGCCTCATGCGGCGCTACACATCTCCtttacatagagttgatcaggctgttggttgtggcctgtggaatgttgtcccactcctcttcaatggctgtgaaaagttgctggatgttggcgggaactggaacacgctgtcggaCAGCGCATCCCAAAcatactcaatgggtgacatgtctggtggggatataggccatggaagaactctGTATTTTAttacagcttccaggaattgtgtacagatccttgtgacatggagttgtgcattatcattctgaaacatgaCGTGGTGGCTGTGCattaatggcacgacaatgggaactcagtgcattcaaattgtcacaTGTAAAATGCacttgtgtttgttgtccgtatcTTAGCCTGCCCACACAATAacctcaccgccaccatggggcactctgttcacaatgttgacatcagaaaaccgctcgcccacatgacgccatacacgtggcctggagtttttatttttttgtgtatgtgtgtgtatgcagtgtgtgtatccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccagtgtgtatttgtgtgtgtgtgtgtgtccagtgtgtgtgtgtgtgtgtgtgttcagtgtatgtgtgttcagtgtatgtgtgtccagtgtgtgtatgtgtatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289729 lncRNA downstream 12085 99644089 ~ 99644786 (-) True G1132929
TU1289721 lncRNA downstream 32258 99623806 ~ 99624613 (-) True G1132921
TU1289686 lncRNA downstream 45409 99568778 ~ 99611462 (-) True LOC118937841
TU1289712 lncRNA downstream 63987 99591409 ~ 99592884 (-) True G1132912
TU1289708 lncRNA downstream 67239 99580903 ~ 99589632 (-) True G1132908
TU1289774 lncRNA upstream 438 99753397 ~ 99754187 (-) True G1132967
TU1289775 lncRNA upstream 1263 99754222 ~ 99757713 (-) True G1132968
TU1289779 lncRNA upstream 10779 99763738 ~ 99765603 (-) False G1132971
TU1289782 lncRNA upstream 10779 99763738 ~ 99765603 (-) False G1132971
TU1289781 lncRNA upstream 11125 99764084 ~ 99765603 (-) False G1132971
XM_036939577.1 mRNA downstream 25798 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA downstream 52213 99603751 ~ 99604658 (-) True LOC118937859
XM_036939489.1 mRNA downstream 100556 99539308 ~ 99556315 (-) True LOC110538877
XM_036939490.1 mRNA downstream 100653 99539308 ~ 99556218 (-) False LOC110538877
XM_036939488.1 mRNA downstream 275900 99351529 ~ 99380971 (-) False LOC110538879
XM_036939641.1 mRNA upstream 76471 99829430 ~ 100834884 (-) False LOC110539068
XR_005035282.1 mRNA upstream 97197 99850156 ~ 99857256 (-) False LOC110538873
XM_036939601.1 mRNA upstream 193777 99946736 ~ 99965247 (-) True LOC110539071
XR_005035275.1 mRNA upstream 213464 99966423 ~ 99968463 (-) True LOC118937866
XM_036939620.1 mRNA upstream 216715 99969674 ~ 99985905 (-) True LOC110539073
TU1289296 other downstream 329947 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 473956 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 480963 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 490264 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 564633 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 87480 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 87480 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 171101 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 171101 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 457498 100210457 ~ 100211148 (-) True G1134054

Expression Profile