RNA id: TU1289752


Basic Information

Item Value
RNA id TU1289752
length 258
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1132948
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99704767 ~ 99705090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aTTTAACAGTGAGTATCAGCAGTGTACAACCAAATGGATGGGGAGAGTGGGGGTCTATGTAAtggtccggtggccatttgatgaattgttcagcagtcttatggcttgggggtagaagctgttaaggagccttttggtcccagacttggcgctacggtaccacttgccgtgcggtagcagagaaaacagtctatgacgagGGTGACttgagtctctgacaattttatgggctttcctctgacaccgcctattatatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289744 lncRNA downstream 11067 99693302 ~ 99693700 (-) True G1132941
TU1289718 lncRNA downstream 43565 99616668 ~ 99661202 (-) True G1132918
TU1289729 lncRNA downstream 59981 99644089 ~ 99644786 (-) True G1132929
TU1289721 lncRNA downstream 80154 99623806 ~ 99624613 (-) True G1132921
TU1289686 lncRNA downstream 93305 99568778 ~ 99611462 (-) True LOC118937841
TU1289753 lncRNA upstream 322 99705412 ~ 99706569 (-) True G1132949
TU1289761 lncRNA upstream 17696 99722786 ~ 99723861 (-) True G1132955
TU1289767 lncRNA upstream 36441 99741531 ~ 99743563 (-) True G1132961
TU1289769 lncRNA upstream 39744 99744834 ~ 99749856 (-) True G1132963
TU1289774 lncRNA upstream 48307 99753397 ~ 99754187 (-) True G1132967
XM_036939642.1 mRNA downstream 32129 99639639 ~ 99672638 (-) True LOC110485298
XM_036939577.1 mRNA downstream 73694 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA downstream 100109 99603751 ~ 99604658 (-) True LOC118937859
XM_036939489.1 mRNA downstream 148452 99539308 ~ 99556315 (-) True LOC110538877
XM_036939490.1 mRNA downstream 148549 99539308 ~ 99556218 (-) False LOC110538877
XM_036939641.1 mRNA upstream 124340 99829430 ~ 100834884 (-) False LOC110539068
XR_005035282.1 mRNA upstream 145066 99850156 ~ 99857256 (-) False LOC110538873
XM_036939601.1 mRNA upstream 241646 99946736 ~ 99965247 (-) True LOC110539071
XR_005035275.1 mRNA upstream 261333 99966423 ~ 99968463 (-) True LOC118937866
XM_036939620.1 mRNA upstream 264584 99969674 ~ 99985905 (-) True LOC110539073
TU1289296 other downstream 377843 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 521852 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 528859 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 538160 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 612529 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 135349 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 135349 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 218970 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 218970 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 505367 100210457 ~ 100211148 (-) True G1134054

Expression Profile