RNA id: TU1289782


Basic Information

Item Value
RNA id TU1289782
length 1128
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G1132971
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99763738 ~ 99765603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTAATAGAACCAGGACACTTTGTCACAAGATATAACAGAAGCTAATAGAACCAGGACACTCTGTCACAAGATATAACAGAAGCTAATAGAACCAGGACACTCTGTCACAAGATATAACAGGAGCTAATAGAACCAGGACACTATGTCACAAGATATAACAGATACTACTAAGCCTGATTGTCTGAACTCATCTTTGATCAAATGTGTAGCAGCAGTTTGCAATTGTATGGCAGAATAGCTGTGCACACAATCCTTATACCTCTTCATGGACTACAGTTGAACATTGTCTTGTTTTAGGGTGTGAACTGGTATGGTCTGATTTGAATTACAGCAGTTATTTTAACAATGCTGGTTATAAATATTGTTGACATTCATCCAAGGAGACCTTGACTTGCATTACACTTGCTGCAGAAAAACATTTTCATGAAATGATGAGACTTCTAGTTAGAGAAAATGATTCCAATAAACGTGCCCTGATACAAGCAAGAAACAAGTAATCGATGAAACACAATGTGACATATCTGTTTGATAGTTCACACATTCATCCGTCAGGGTTACTATCTTGTCATCTTTTTGACTAACCACAGTGGAACATTCTAGTCTTTAAGGACATTAACTGGCAGAACAGGTTTCAGCAAATTATGGTGTCATTGTTTTCAGGAAGGTGTGCCCATGGTCTTTGTACTGCAGTACAAAGGCAAAGAGCAGTTTACGTAAACAGCGAATATGATAAAAACTGCATTAAAGTTAGTTTTTTTGTCCATGCATATCAACCATGACCACTGATCTGAACTATGACCCCTAAAATACTGATACTGCACTATGGGTAATGCAAAAGCAAAGTAGAGTATCTAGAAATCTAAATGTGTTGATCCAACATTTAGTTGTTTTTCTGTTTGATTTGAATAGTTTGAGTTCTAACTACattccaactgtatttaatggtgttttGTAGTTTTGTtttcatgttttcttttttttagcCATAAGGTTATTTAATCACGGAGAATGTTCATACTTAATAAATATTTGATTTTGTATTACTAGCAATGCTGTCATTTTCTTTATGTTAGCTATTATTTCTATATTTTGTTTATCTTTCTTACCATTATCTGGgtatttactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289775 lncRNA downstream 6025 99754222 ~ 99757713 (-) True G1132968
TU1289774 lncRNA downstream 9551 99753397 ~ 99754187 (-) True G1132967
TU1289769 lncRNA downstream 13882 99744834 ~ 99749856 (-) True G1132963
TU1289767 lncRNA downstream 20175 99741531 ~ 99743563 (-) True G1132961
TU1289761 lncRNA downstream 39877 99722786 ~ 99723861 (-) True G1132955
TU1289803 lncRNA upstream 24267 99789870 ~ 99793262 (-) True G1132978
TU1289698 lncRNA upstream 41006 99806609 ~ 99872529 (-) True G1132898
TU1289695 lncRNA upstream 84606 99850209 ~ 99857121 (-) True LOC110538873
TU1289841 lncRNA upstream 94042 99859645 ~ 99860074 (-) True G1133000
TU1289852 lncRNA upstream 113275 99878878 ~ 99880576 (-) True G1133008
XM_036939642.1 mRNA downstream 91100 99639639 ~ 99672638 (-) True LOC110485298
XM_036939577.1 mRNA downstream 132665 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA downstream 159080 99603751 ~ 99604658 (-) True LOC118937859
XM_036939489.1 mRNA downstream 207423 99539308 ~ 99556315 (-) True LOC110538877
XM_036939490.1 mRNA downstream 207520 99539308 ~ 99556218 (-) False LOC110538877
XM_036939641.1 mRNA upstream 63827 99829430 ~ 100834884 (-) False LOC110539068
XR_005035282.1 mRNA upstream 84553 99850156 ~ 99857256 (-) False LOC110538873
XM_036939601.1 mRNA upstream 181133 99946736 ~ 99965247 (-) True LOC110539071
XR_005035275.1 mRNA upstream 200820 99966423 ~ 99968463 (-) True LOC118937866
XM_036939620.1 mRNA upstream 204071 99969674 ~ 99985905 (-) True LOC110539073
TU1289296 other downstream 436814 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 580823 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 587830 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 597131 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 671500 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 74836 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 74836 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 158457 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 158457 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 444854 100210457 ~ 100211148 (-) True G1134054

Expression Profile