RNA id: TU1289852


Basic Information

Item Value
RNA id TU1289852
length 931
lncRNA type read_through
GC content 0.34
exon number 2
gene id G1133008
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99878878 ~ 99880576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTGCTACAACTATGAAAACACAAAAGCATGTGCAGATGACTTTTTATaacgacaaaaaaaaaaataatagccAAGGACAAAGGCATGCGGTGGATGGAGAAAATATCAGCAGCCTAAACTAATCATTAGTGTTCAATGtcacgtactaaactaatcattagtgttcaacgtcacgtactaaactaatcattagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcatgtactaaactaatcattagtgttcaacgtcacgtactaaactaatcattagtgttcaacgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcacatactaaactaatcattagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcaGTAGTGTTCAATGTCACATACTAAACTAATCAGTAGTGTTCAATGtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcaGTAGTGTTCAATGTCACGTACTAAACTAATCGGTAGTGTTCAATGTCACGTGCGCAAGTACAGTGAAATTCCTTTCCTGCAAGTCCTAAACCCAACAATCAATCAATAAACACACAAGAAATACAAATAGAAGAGAAGAAATGAAAAGAACACTAGAAAAGAAGAAGCGATGTACAGAGTCAGTTCCATATTTATGAGCAGGGAGACTGGAATGATAGATGTAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289698 lncRNA downstream 6349 99806609 ~ 99872529 (-) True G1132898
TU1289841 lncRNA downstream 18804 99859645 ~ 99860074 (-) True G1133000
TU1289695 lncRNA downstream 21757 99850209 ~ 99857121 (-) True LOC110538873
TU1289803 lncRNA downstream 85616 99789870 ~ 99793262 (-) True G1132978
TU1289788 lncRNA downstream 113275 99764315 ~ 99765603 (-) False G1132971
TU1289853 lncRNA upstream 1996 99882572 ~ 99883918 (-) True G1133009
TU1289856 lncRNA upstream 5424 99886000 ~ 99886219 (-) True G1133012
TU1289872 lncRNA upstream 37098 99917674 ~ 99919868 (-) False G1133026
TU1289873 lncRNA upstream 37217 99917793 ~ 99919868 (-) True G1133026
TU1289879 lncRNA upstream 50045 99930621 ~ 99943583 (-) True G1133030
XR_005035282.1 mRNA downstream 21622 99850156 ~ 99857256 (-) False LOC110538873
XM_036939642.1 mRNA downstream 206240 99639639 ~ 99672638 (-) True LOC110485298
XM_036939577.1 mRNA downstream 247805 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA downstream 274220 99603751 ~ 99604658 (-) True LOC118937859
XM_036939489.1 mRNA downstream 322563 99539308 ~ 99556315 (-) True LOC110538877
XM_036939601.1 mRNA upstream 66160 99946736 ~ 99965247 (-) True LOC110539071
XR_005035275.1 mRNA upstream 85847 99966423 ~ 99968463 (-) True LOC118937866
XM_036939620.1 mRNA upstream 89098 99969674 ~ 99985905 (-) True LOC110539073
XM_036939630.1 mRNA upstream 377654 100258230 ~ 100295591 (-) False LOC118937853
XM_036939635.1 mRNA upstream 553675 100434251 ~ 100462726 (-) True carhsp1
TU1289697 other downstream 31892 99840439 ~ 99846986 (-) False LOC110539068
TU1289696 other downstream 35952 99840439 ~ 99842926 (-) False LOC110539068
TU1289296 other downstream 551954 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 695963 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 702970 99173665 ~ 99175908 (-) False G1132569
TU1289875 other upstream 43484 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 43484 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 329881 100210457 ~ 100211148 (-) True G1134054
TU1291344 other upstream 378078 100258654 ~ 100295566 (-) True LOC118937853
TU1291428 other upstream 540381 100420957 ~ 100423066 (-) True G1134117

Expression Profile