RNA id: TU1291860


Basic Information

Item Value
RNA id TU1291860
length 607
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1134387
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100935397 ~ 100936074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgatgtgggggttctctcataaccctcagttcccaggtgggtagatggcaggttgaataaagagaagctagtgatgtgggggttctctcataaccctcagtccccaggtgggtagatggcaggttgaataaagagaagctaatgatgtgggggttctctcataaccctcagtccccaggtgggtagatggcaggttgaataaagagaagctagtgatgtgggggttctctaataaccctcagtccccaggtgggtagatggcaggttgaataaagagaagctagtgatgtggaggttctctcataaccctcagtccccaggtgggtagatggcaggttgaataaagagaaaacaataggCTATATAACAAAATCCATGAATGTATAATTATTGTATAATTtccacaaaacattaaggacacctttctttccatgacaaactgaccaggcgcaacgcaatattaggaaggtatccTTAATATTTTGTTCACTCAGTGGTTCTGACCCTTTACATAACAGACAATCCTCTTTGCCAGGAACCTTCTTAAGCGCTTGAAATTTTCCCAAATGCTTCCACACTGATGCTCTCTCACAGCTGCTCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1291809 lncRNA downstream 62216 100844601 ~ 100873181 (-) True G1134340
TU1291848 lncRNA downstream 69660 100864658 ~ 100865737 (-) True G1134379
TU1291847 lncRNA downstream 70326 100864115 ~ 100865071 (-) True G1134378
TU1291770 lncRNA downstream 107305 100827469 ~ 100828092 (-) True G1134316
TU1291839 lncRNA downstream 111218 100823965 ~ 100824179 (-) True G1134370
TU1291800 lncRNA upstream 3170 100939244 ~ 100939972 (-) True G1134332
TU1291762 lncRNA upstream 5959 100942033 ~ 100942951 (-) False LOC110518098
TU1291870 lncRNA upstream 15088 100951162 ~ 100953715 (-) False G1134391
TU1291871 lncRNA upstream 15088 100951162 ~ 100952243 (-) True G1134391
TU1291874 lncRNA upstream 19138 100955212 ~ 100955508 (-) True G1134394
XM_036939641.1 mRNA downstream 100513 99829430 ~ 100834884 (-) False LOC110539068
XM_036939647.1 mRNA downstream 113484 100816544 ~ 100821913 (-) False LOC118937873
XM_036939636.1 mRNA downstream 283698 100628440 ~ 100651699 (-) False LOC118937858
XR_005035286.1 mRNA downstream 309671 100624170 ~ 100625726 (-) False LOC118937871
XM_036939623.1 mRNA downstream 376547 100549187 ~ 100558850 (-) True c12h16orf72
XM_036939571.1 mRNA upstream 6100 100942174 ~ 101130515 (-) False LOC110518098
XM_036939640.1 mRNA upstream 217470 101153544 ~ 101154154 (-) False LOC118937863
XM_036939578.1 mRNA upstream 219319 101155393 ~ 101271098 (-) False LOC110511505
XM_036939608.1 mRNA upstream 317512 101253586 ~ 101258211 (-) False LOC118937847
XR_005035262.1 mRNA upstream 318213 101254287 ~ 101255271 (-) True LOC118937847
TU1291798 other downstream 106472 100828518 ~ 100828925 (-) True LOC110539068
TU1291769 other downstream 107305 100827176 ~ 100828092 (-) False G1134316
TU1291773 other downstream 117477 100817272 ~ 100817920 (-) True LOC118937873
TU1291540 other downstream 300940 100628443 ~ 100634457 (-) False LOC118937858
TU1291411 other downstream 392028 100535167 ~ 100543369 (-) True eci1
TU1291808 other upstream 4331 100940405 ~ 100941907 (-) True G1134339
TU1291750 other upstream 12762 100948836 ~ 100949751 (-) True LOC110518098
TU1291785 other upstream 57736 100993810 ~ 100998516 (-) False G1134323
TU1291754 other upstream 139988 101076062 ~ 101088555 (-) False G1134312
TU1291757 other upstream 139988 101076062 ~ 101088555 (-) True G1134312

Expression Profile