RNA id: TU1292215



Basic Information


Item Value
RNA id TU1292215
length 603
lncRNA type read_through
GC content 0.41
exon number 4
gene id G1134633
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 102051729 ~ 102053310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atctaggatcaggtcccttctctccatgtaatctgattcattatgatctaggatcaggtcccccctctccatgtaatctgattcattatgatctaggatcaggtcccttctctccatgtaatctgattcattatgatctaggatcaggtccctcctctccatgtaatctgattcattatgatctaggatcaggtcctcctctccatgtaatctgattcattatgatctaggatcaggtccctcctctccatgtaatctgattcattatgatctaggatcaggtcctcctctccatgtaatctgattcattatgatctaggatcaggtccctcctctccatgtaatctgattcattatgatctaggatcaggtccctcctctccatgtaatctgattcattatgatctaggatcaggtccctcctctccatgtaatctgattcattatgatctaggatcaggtcctcctctccatgtaatctgattcattatgatctaggatcaggtcccttctctccatgtaatctgattcattatgatctaggatcaggtcccttctctccatgtaatctgattcattatgattgtTTTGTCTCATGACTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1292208 lncRNA downstream 3429 102047946 ~ 102048300 (-) True G1134628
TU1292205 lncRNA downstream 12744 102037661 ~ 102038985 (-) True G1134626
TU1292199 lncRNA downstream 32079 102018233 ~ 102019650 (-) True G1134622
TU1292125 lncRNA downstream 49483 102001150 ~ 102002246 (-) True G1134575
TU1292193 lncRNA downstream 50629 101996751 ~ 102001100 (-) True G1134618
TU1292219 lncRNA upstream 1226 102054536 ~ 102055058 (-) True G1134634
TU1292223 lncRNA upstream 16896 102070206 ~ 102070925 (-) True G1134638
TU1292224 lncRNA upstream 17670 102070980 ~ 102071572 (-) True G1134639
TU1292229 lncRNA upstream 35882 102089192 ~ 102089753 (-) True G1134643
TU1291692 lncRNA upstream 51913 102105223 ~ 102106343 (-) True G1134290
XM_036939593.1 mRNA downstream 97258 101763113 ~ 101954471 (-) False LOC110516333
XM_036939592.1 mRNA downstream 146171 101763112 ~ 101905558 (-) False LOC110516333
XM_036939590.1 mRNA downstream 146173 101763113 ~ 101905556 (-) False LOC110516333
XM_036939591.1 mRNA downstream 146415 101899326 ~ 101905314 (-) True LOC110516333
XM_036939589.1 mRNA downstream 199553 101820763 ~ 101852176 (-) True LOC110512533
XM_036939643.1 mRNA upstream 27618 102080928 ~ 102087118 (-) True LOC118937864
XM_036936708.1 mRNA upstream 63295 102116605 ~ 102232078 (-) True LOC118937612
XM_036939582.1 mRNA upstream 188803 102242113 ~ 102545195 (-) False LOC118937843
XR_005035264.1 mRNA upstream 375812 102429122 ~ 102444420 (-) False LOC118937850
XM_036939614.1 mRNA upstream 382744 102436054 ~ 102442208 (-) False LOC118937850
TU1292187 other downstream 75723 101974649 ~ 101976006 (-) True G1134612
TU1291669 other downstream 97286 101945602 ~ 101954443 (-) True G1134287
TU1291734 other downstream 288476 101756130 ~ 101763253 (-) False G1134303
TU1292026 other downstream 457285 101536397 ~ 101594444 (-) True G1134515
TU1291793 other downstream 544965 101497715 ~ 101506764 (-) True LOC118937846
TU1291790 other upstream 179728 102233038 ~ 102233671 (-) False G1134325
TU1291730 other upstream 181779 102235089 ~ 102236521 (-) True G1134301
TU1291741 other upstream 238959 102292269 ~ 102363039 (-) False LOC118937843
TU1291748 other upstream 238959 102292269 ~ 102363039 (-) True LOC118937843
TU1291727 other upstream 310825 102364135 ~ 102366535 (-) True G1134299

Expression Profile