RNA id: LOC110518365


Basic Information

Item Value
RNA id LOC110518365
length 4561
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110518365
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2380096 ~ 2431119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTTATTtgagctgaaacaacatgagagaatacacactggggagaagccttaccactgctcccagtgtggaaagagttttaaccagaAAGGAAACCTGAAAactcatgagagaatacacacaaggGGGAAGCCTTACCGCTGCATGCAGTGTGGAAAGATTTTTAACGATTTGGGAAAGCTGGAAcggcacgagagaatacacagaggggagaagccttaccactgctcccagtgtggaaagcgttTTAACGATTTGGGGAAGCTGGAAcggcacgagagaatacacagaggggagaagccttaccactgctcccagtgtggaaagggttgtaACGATTTGGGGACGCTGAAacgacacgagagaatacacacaggggagaagccttaccactgctcccactgtggaaagcgTTTTAACGATTTGTGGAAggtgaaacgacatgagagaatacacacaggggagaagccttaccactgctcccactgtggaaagtgtttcaaccagtcaggggagctgaaacgacatgagagaatacacacaggggagaagcctatgcacacaggggagaagccttaccactgctcccactgtggaaagtgTTTCGTCCAGTCAGGGGagctgaaacgacatgagagaatacacacaggggagaagccttaccactgcttgCAATGTGAAAAGATGTATAGGCGGAAAGGACACCTAAAAGCTCACGAGAAAattcatacaggggagaagccttaccaatgctcccagtgtggaaagtgtttcacctGGGCAGGGGATCTGAAAAAACAcgaaagaatacacacaggggaaaagccttacccctgctcccagtgtggcaagtgtttcaATGAGACAGGGGATCTGAAAAAACAcgaaagaatacacacaggggagaagccttacccctGCTCCCATTGTGGCAAGTGTTTTAACCAGTTAGGGGCCCTGAAACAgcacaagagaatacacacaggggagaagctttaccactgctcccagtgtggcaagtgttttaaCCAGTTAGGGACCCTGAAACAGCACAAGAtcatacacacaggggagatgcATTACCACTCCTCCCAGGGCGCAAAGCAtttgcccattgacaacgctagcccttccaCCCTGTGTCGTGTCTCTCTgggtagcaccttactgctgggtatgaagaggttgtctgtgctgctggtggactgcaggaaaacaacagggctgagtggaactgtgagaggaggagaagagatgaaaggatcagatttgactcatcaaagagaaagaccagactcagaggaaccagagccagggacgtACAAACCAGCAAGAAGACACCAgtgttcccactgtggaaagggttatAACCACTTAAATGAGCTTAAacgacacgagagaatacacacaggggagaagccttaccactgttcccagtgtggaaagggttttaacgATTTGGGAAAGCTGAAACGACACgggagaatacacacaggggataagccttaccactgctcccagtgtggaaggcGTTTTAACGATTTGGGGAAGCTGGAacgacacgagagaatacacagaggggagaagccttaccactgctcccagtgtggaaagggttgtaACGATTTGGGGAAGCTGAAacgacacgagagaatacacacgggtgaaaagccttaccactgctcccactgcGGAAAGCGTTTTAACGATTTGGGCAAggtgaaacgacatgagagaatacacacaggggagaagccttaccattgctcccactgtggaaagtgtttcaaccagttaGGGACCCTGAAACAGCACAAGgtaatacacacaggggagaatcgttaccactgctcccagtgtggaaagggttttaacgATTTGGGGAagctgaaacgacatgagagaatacacacaggggagaagccttaccattgCTCGCAATGTGAAAAGATGTATAGCGAGAAAGGACACCTGAAAGCCCATGAGAaaattcacacaggggagaagccttaccaatgctcccagtgtggaaagtgtttcacctGGGCAGGGTATCTGAAAAAACAcgaaagaatacacacaggggagaagccttaccactgctcccagtgtggcaagtgtttcaACGGGGCAGGGGATCTGAAAAAACACGAAagaatacatacaggagagaagccttaccactgctcccgcTGTGTCAAGTGTTTTAACCAGTTAGGGGCCCTGAAAcagcacgagagaatacacacaggggagaagccttaccactgctcccagtgtggcaagtgttttaaCCAGTTAGGGACCCTGAAACAGCACAAgataatacacacaggggagatgcattaccactcctcccaggatgcaaagcttttgcccAGAACACACTTTCACAACCCTCCCAAACCTCTCTACAACATCCCCAACAAACACCTTCACAACCCTCCCAAACCTCTCTACAACATCCCCAACAAACACCTTCACAACCCTCCTAAACCTCTCTACAACATTCCCAACAAACACCTTCACAACCCTCCCAAACCTCTCTACAACATCCCCAAACACCTCCACAACCCTCACAAAATCCCCAAACACCTCCACAACCCTCACAAACGTCTCTACAACATCCTGACATCTGAAGATATCAGTGGTCACTCTTCATCAAGAGCAGGTTCCACACTTCCCTTCCTCCGCTTCTTTGTCACCGGCTCCACACCTCTTGATGGCCGGGCGGGGGTAGGTGTGGTGCCGGAGACAGCAGGGGTCCGGCTGGATggaccagcttcagtgggggatctGCACCTTGGCAgagaaagaccagactcGGTGGATccagagccagggacgtccaaaccagcaagaAGACACCagtgctcccactgtggaaagggttgtaACCGGTTTTgggacctgaaacaacatgagaaaatacacacaggggagaagtcttaccactgctcccagtgtggaaatagTTTTAAAGATTTAGTGaacctgaaacaacatgaaaAGCCTTAtcactgttcccagtgtggaaagtgtttcagccAGTCATCGGACCTGAAACGGCACGAGAAAAttcacaggggagaagccttaccactgctcccagtgtggcaagtgttttaaCCGGGTAGGgaacctgaaacaacatgagaaaattcacacaggggagaagcctttccactgctcccagtgtggaaagtgttttagCCAGTCATTGGACCTGAAACGGCACGAGAgaattcacacaggggagaagcctttccactgctcccagtgtggaaagtgtttcagccAGTCATTGGACCTGAAACGGCACGAGAgaattcacacaggggagaagcctttccactgctcccagtgtgggaagTGTTTCAGCCAGTCATCGGACCTGAAACGGCATGAGAAAATCCACACAAGGGAGaggccttaccactgctcccagtgtggcaagtgttttaaCCGGGTAGGGAACCTGAAACGGCACGAGAgaattcacacaggggagaagcctttccactgctcccagtgtgcaaAGTGTTTCCGCCAGTCATTGGACCTGAAACGGCACGAGAgaattcacacaggggagaagcctttccactgctccctGTGTGGCAAGTGTTTCGCCCAGTTAGTGAATCTGAAACAGCACAATCTagtacacacaggggagaagcctttccactgctccctGTGTGGCAAGTGTTTCACCCAGTTAGGGAATCTGAAACAGCATGAGCTagtacacacaggggagaagcctttccactgctcccagtgtggcaagtgtttcaACCGGTCAGGACAACTGAAAGTTCATGAGCTtgtacacacaggggagaagccttaccactgctccttgtgtggcaagtgttttaaccagttaaggaatctgaaacaacatgagctagtacacacaggggagaagccataccactgctcccagtgtggcaagtgtttcaAACATTCGGGGGATCTGAAAAATCAcgaaagaatacacacaggggagaatcCTTACCACTCCTCCCGGTGTGCAAAGCAtttgcccatttaggaagcctgaaagagCATGACACAGAGGAGAAGGCTTTACAGAAGATTAGACTTTGGGAAAACATATTACTCATAACAATCACTTAAACGTCACTcgagaatccacacaggagagagaaattacttctcttagcgtgtatatattgatatttcacatctCATTTTTCTTacaattcatcagagaacatacacagtgctcccgttgtcttatattgttgactgaTAATGTGTTTACCTGTTTTTACCAGAttaaattgcttcttccaattattgataaacatgtacctgttaagaaactgactgttagatatgttaaggctccatggattgatgaggaattaaaaaaCTGTATGTTTGAAAGAGTTGGGGCAAAAGgggtggctaataagtctggctgcacatctggctGGCTGTTttactgtaaattgagaaattatgtgaccaaactcaacaaaaataatatgttttattatgaagccaagatcaatgatataaagaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1294761 lncRNA downstream 72764 2279083 ~ 2307332 (-) True G1136494
TU1294753 lncRNA downstream 83162 2268267 ~ 2296934 (-) True G1136489
TU1294734 lncRNA downstream 122299 2257083 ~ 2257797 (-) True G1136475
TU1294745 lncRNA downstream 171379 2208050 ~ 2208717 (-) True G1136481
TU1294685 lncRNA downstream 205933 2173124 ~ 2174163 (-) True G1136448
TU1294827 lncRNA upstream 76372 2507491 ~ 2508004 (-) False LOC118938509
TU1294840 lncRNA upstream 89679 2520798 ~ 2521112 (-) True G1136565
TU1295132 lncRNA upstream 92787 2523906 ~ 2536759 (-) True G1136783
TU1295137 lncRNA upstream 99356 2530475 ~ 2556166 (-) True G1136788
TU1295139 lncRNA upstream 125337 2556456 ~ 2556728 (-) True G1136789
LOC118938507 mRNA downstream 4694 2336283 ~ 2375402 (-) True LOC118938507
XM_036942284.1 mRNA downstream 19904 2351735 ~ 2360192 (-) True LOC118938413
XM_036942275.1 mRNA downstream 87951 2284655 ~ 2292145 (-) True LOC118936483
LOC118938412 mRNA downstream 120913 2251652 ~ 2259183 (-) True LOC118938412
XM_036942547.1 mRNA downstream 136616 2194122 ~ 2243480 (-) True LOC110513814
XM_036942548.1 mRNA upstream 13324 2444443 ~ 2468862 (-) True LOC118938508
XM_036942302.1 mRNA upstream 50489 2481608 ~ 2492020 (-) True LOC110493356
XM_036942270.1 mRNA upstream 66175 2497294 ~ 2503751 (-) True LOC110487163
XM_036942549.1 mRNA upstream 76100 2507219 ~ 2518648 (-) False LOC118938509
XM_036942210.1 mRNA upstream 298680 2729799 ~ 2737749 (-) False LOC110495017
TU1294697 other downstream 134778 2187440 ~ 2245318 (-) True G1136455
TU1294682 other downstream 192385 2171650 ~ 2187711 (-) False G1136447
TU1294663 other downstream 209657 2129718 ~ 2170439 (-) True G1136432
TU1294658 other downstream 238283 2129718 ~ 2141813 (-) False G1136432
TU1294544 other downstream 283212 2080210 ~ 2096884 (-) True LOC110515515
TU1294826 other upstream 77144 2508263 ~ 2514918 (-) True LOC118938509
TU1294843 other upstream 90708 2521827 ~ 2522361 (-) True G1136568
TU1295328 other upstream 427912 2859031 ~ 2860041 (-) True G1136948
TU1295641 other upstream 698494 3129613 ~ 3130553 (-) True G1137174
TU1295655 other upstream 730160 3161279 ~ 3188184 (-) True LOC110514041

Expression Profile