RNA id: XM_036942213.1


Basic Information

Item Value
RNA id XM_036942213.1
length 3078
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110495017
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2728631 ~ 2748424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTAATAACGTCAGTCAAAGCGGAAGTGGCTGCTAAAGATGGTAGCTGACAGTCGTGCTACTTATGTAGCTTTCAAGCGATATGTTATTCTCTTAATAAACAAAATACAATATCCACAGGTCAACTTTGTTTTGACGTAAAGGATCATTAGCTGAAACTGAAGAGATGTGGGTAGCTAGCTATCTACCTTTTCCACATGGGGGGAAAAAACGGTGGGCAGACGcttggtagctagctacctaacgttagctgTTTTCTACAAGGTACCTGCAGGAAAACATGAGTGAAGAGAAGGAAACATTGTTGGATGAAATCGAACAGAGTTTATTTACTCTAACTAAGGACAATATACTATACCTGTGTGAGCGCTGTGGAATAGATGGCTCCCAAGTTAAAGGAAAGAACCATCGCTCGTTGCGACGTAAAATCATGGAGGAAATGTGGGAAAATGCAGATTCAGTCAAATCGGAGGAGCTTGGAATGTCTTGGTTACTCCGACTGAAAGATGACATCAGGAGGATACAGGAAGAATCTACTGTGGCACCCATGAGTTCCAGCCAgtctgatgatgatgacgatgctACAACCTGCGGCGAGGAATGGGACATGCAGGACAAGGATTGGTTTCCTAGCAACGGGCTGGAGGCGGAGTCATCTCCACAGAGGCATAccccagagcagagggagagtggTGACAAGCCACCTTCCTCCCTCCAGTCCCTGGGTTGTACCTCTCCCAGGAGTGCCTTACTGCGGGGTCTGAAGAGGGCGTCTGTGTGGCTGGACGACTGCAGGAAAACACccgggctgagtggaactgtgagaggaggagatgaagagggagaTTTGACTGATCAAAgagagagacatgactatccTGGATCCTCTGGGgcacctcaacaacatcctgatgctcaCAAGGCAGAGAaaagtctctccagatcagaacacctcgAGAAACATGAATGGAGACCCACAGGGATGAAACCtcaccactgctctgactgtgggaagagttgcAAATCTTCATCAGCACTAAAAAAACACCAGACAATCCATACAGgggagaaaccttatagctgttcCCAGTGTAGGAAGAGTTTTGCTCAGTTACAAGAACTGaaagtacaccagagaacacacacaggagagaagccttataactgtgatcaatgtggaaagagtttttgTTATTCAAGCCAGTTTAAAGTACACCTGCAGAGACACACAGgcgagaagccttatagctgttcAGACTGTGGGATACGCGTTTGTACCTCAAGTCAGCTGTTATTGCACAAGCGAACCCACACAGAAGAGAAGCCTTACAGCTGCTTACTGTGTGAGAAAAGATTTTCGTCAAAATATAGTCTGAAATTACACCAGCGGGTCCACACTGGAGAAACTAATTATGGCTGTGATCAGTGTGAGGAGAGTTTCACCTCGTCGGCAGACCTCAGAACTCACCAGAGAATCCACACTGGAGGGaaacctcacctctgctcccagtGCGGGAAGCGCTTCCGCCAACAATCTGGCTTGAAAAGCCACGAGaggattcacacaggagagaaacctttccaGTGCTCTCACTGTGGGAAGACATTCAGCCACAGGGCCACGTTTAAGGCACACCAGCGGACTCAcaccggagagaagccttaccaatgCTCCCAGTGCAGGAGGAGTTTCTCCCAAATGGGCCACCTGAAAGTACACCAACAGACGCATGCTAAAGTGAGGTCTCACCTCTGCCCGCAGTGTGGTAAGGGCTACTACTCTCTAGACATCTACAATGCACACATGAGAACACACAACGGGGAGAAGACTCACCACTGCGCCGACTGTCCCAAGAACTTCCTCACCCTGACTCAGCTCAAAACACACCagcggacacacacaggagagaaaccgtacGTCTGCGaccagtgtgggaagagctttgctgaGTCGGGAAGCCTGACTCTACACCAGCGCTCGCACACTGGGGAaaaaccttaccactgctctgaGTGCGGGAAGAGCTTTGCTCGCTCCGGGGCACTGAAGAAGCACCAGCTTacacacactggggagaagccGTACAGCTGTGGTCAGTGTGGGAAGAGGTTTCCCAGGTCAGATACTCTGGCTACACACATGAgaacacatacaggagagaagccctaTAGGTGTGATCCATGTGGTGAGAGGTTCTCCTATCATAGGTGCCTGGtgaaacacatgaaaacacatgtAGGAGATACACCAGCCCTCGAGCGACCAATCACCCTAGGCCTCGGGGTTGAATGACCTATCCATCAACCAATCACACCAGGCCTAGGGTAAAATGGAAATGTCTTACAGATTTAAATAtgaacagcatggtagcaattgaaagaaaAAATGTTGAGcgcacaacagttcacctgacacaagactgaatccaaacattactgTTGATTTGATATTTGTCTGTACTTCAGGCCACATTGATAACATGTTACTGAACAGCCATGGCGTTCCAATTTCAACCTGTATTCGGGTGTGAGTGTGAAGCGTTCATGGcatataataatattattattagttttaTTATTCAATATTGTTATTAATATGGGTTCGTTGCTGAGTGTTGTAACATGGTGCCAATTTCAAGGCTATATTTCTTGAATTGATTTCAGAATGTGTTGACCCTGATTTGTTagatactccccccccccccccccgccccacacAGCATTTACAAGCTGAATTGTTATGTTGTTGACATGTTTATACATTTAGGAcgtttctaaaaatctgttttataCCAGGTTCTAACATGCATCCTTTTGTCCTGATCtggtccacattctgattgtgatCACATTTTCAGACCGGGTGTAGACAATTAAAGGACACGTTGCGATCAGATCTTCTTGCCTACCCCCGGAGGTATTCAGGCACACATTGTGCAGATGGATCTGGacagatggttgctgataatgggtctctgtacgcctatgtagataatcCATACAAAATGAGCtgttttccagctacaatagtcatttacaacattaaccatgtctacactgtatttatgatgaatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1295260 lncRNA downstream 110 2728631 ~ 2729689 (-) False LOC110495017
TU1295240 lncRNA downstream 17573 2708532 ~ 2712226 (-) True G1136874
TU1295241 lncRNA downstream 18456 2709410 ~ 2711343 (-) True G1136875
TU1295144 lncRNA downstream 69309 2659511 ~ 2660490 (-) False G1136790
TU1295296 lncRNA upstream 52076 2789825 ~ 2790387 (-) True LOC110493365
TU1295277 lncRNA upstream 116834 2854583 ~ 2881323 (-) True G1136900
TU1295338 lncRNA upstream 140296 2878045 ~ 2889026 (-) True G1136956
TU1295280 lncRNA upstream 166001 2903750 ~ 2904062 (-) True G1136903
TU1295346 lncRNA upstream 170785 2908534 ~ 2909344 (-) True G1136964
XM_036942549.1 mRNA downstream 211151 2507219 ~ 2518648 (-) False LOC118938509
XM_036942270.1 mRNA downstream 226048 2497294 ~ 2503751 (-) True LOC110487163
XM_036942302.1 mRNA downstream 237779 2481608 ~ 2492020 (-) True LOC110493356
XM_036942548.1 mRNA downstream 260937 2444443 ~ 2468862 (-) True LOC118938508
LOC110518365 mRNA downstream 298680 2380096 ~ 2431119 (-) True LOC110518365
XM_036942197.1 mRNA upstream 6491 2744240 ~ 2752006 (-) True LOC118938394
XM_036942186.1 mRNA upstream 18472 2756221 ~ 2768560 (-) False LOC118938393
XM_036942187.1 mRNA upstream 18472 2756221 ~ 2768560 (-) False LOC118938393
XM_036942188.1 mRNA upstream 18472 2756221 ~ 2768561 (-) False LOC118938393
XM_036942189.1 mRNA upstream 18472 2756221 ~ 2768561 (-) True LOC118938393
TU1294843 other downstream 207438 2521827 ~ 2522361 (-) True G1136568
TU1294826 other downstream 214881 2508263 ~ 2514918 (-) True LOC118938509
TU1294697 other downstream 484481 2187440 ~ 2245318 (-) True G1136455
TU1294682 other downstream 542088 2171650 ~ 2187711 (-) False G1136447
TU1294663 other downstream 559360 2129718 ~ 2170439 (-) True G1136432
TU1295328 other upstream 121282 2859031 ~ 2860041 (-) True G1136948
TU1295641 other upstream 391864 3129613 ~ 3130553 (-) True G1137174
TU1295655 other upstream 423530 3161279 ~ 3188184 (-) True LOC110514041
TU1296158 other upstream 790690 3528439 ~ 3532124 (-) True LOC110487308
TU1296425 other upstream 993872 3731621 ~ 3733300 (-) True G1137666

Expression Profile