RNA id: XR_005035701.1


Basic Information

Item Value
RNA id XR_005035701.1
length 2536
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118938420
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3382292 ~ 3385041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatcagccaatcagcattcagggctcgaatcacccagtttataatgtctgatataccacggctatcaGCCAataagcattcagggctcgaatcacccagtttataaatatatataaaatgagGGTAATTCATATTGAAGGGAAGAGGTTGTTTGTCTGTTATGGGAGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTTTGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTATGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTGTAGAGAGGGTTGATATGATTATGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTGTAGAGAGGGTTGATATGATTATGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACGAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGTGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTGTAAtaaacctgttcctggagagctaccctcctgtaggttttatctccaaccctgttcctggagagctaccctcctgtaagttttatctccaaccctgttcatggagagctaccctcctgtaggttttaatctccaaccctgttcctggagagctaccctcctgtaggttttaatctccaaccctgttcctggagagctaccctcctgtaggttttaactgcAAACCCAGTTGCAACTAACCCGATTCATCTTATCAGCCAGCTAATTTgtagaatcaggtgcgctagattagggaTGGATTGAAAACCTataggagggtatctctccaggaaggagggtagctctccaggaacagggttggagataaaaaacctacaggagggtaggggCCCAGGTTCTTGTTAGTTTTATTCTGACACCctgtcctattccctatatagtgcagtgtgCACTATATTTGACCAGAAcctctgtagggaatagggtgtcacaaCATTCTGTTTCCATGGTGACGTGGAGCTCAGCTTGTCTCGTTTGAAGGCAACACACATATTGCCTTTCTTCTCTTTTTACAAGGTTACTTTAAAAATAAATAGTTAAGCACTTGAGTTTCATATGGTAAtcgtaaataaaaactatttctACTTCCTGCATTCAGAAAGAGTTTATTAAATATGGCGATATCCAGCTGTTGTCATTTTCAATTTAAGGAAATCACCTGTTTGAgtgttcgtcccaaatggcacccgattccctatgtagtgcactacttttgaccaggacctagaGGGTAAGCCATAGGGCCTTGGTCAAAAATATAGTGCACTtacatagggaagagggtgccgtttgggatgaaTGCTGGGACAGGTGGGACTCCATTGTTTAACATAAAAGGGCTATCGCCTCATTGGTCCCTCTCATGTAACCAATGGCCTGAAGGATGTTTTATGTTTGTTTGTGACAAAATGTTGTTTTAAATTGTCAATTTGTTTAATTGTTCATGAATCGGTTCATTCTTTCCCACCTGTCCTGAGGTTGGTTGTTTATAATTGCGTAGATTGAATTATTAAATATcttgtctttttttattttttattctcatttattttttcatttagAGGAATTCCACCACCTTTCCGTAAGTTGTGGTCTatataggggcggcaggtagtctagtggttagtgttgggccagtaaccgaacggTTGCTAGAttagatcccccgagctgacaaggtaaaacatcgtccgttctgcccctaaacaaggcagtttaacccactgttcctcggtaggccgtcattgtaaataagaatgtgttcttaactgacttgcctggttaaatataaGGGATGCCATTGGGAACAAACTAAGTTGTATACTGGAGATGATGAATGAGGTTTAACAGTGGTGGAATGTCCCCTTTTAATTAAACTGGTAGTACTACTTCTGGTGCACTGTGATTCCCTCTGACGCGTTACCATGGTGAGAGTGCACAACCatttttgctacacctgcaataacatctgctaaacgtgtgtatgtgacaaacCAAATGTGATTTGACTGTGATTCCCTCTGATGCGTTACCTGGGTTGTTCTGGTTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1296024 lncRNA downstream 15384 3366423 ~ 3366908 (-) True G1137412
TU1296052 lncRNA downstream 40580 3337677 ~ 3341712 (-) False LOC110519358
TU1296053 lncRNA downstream 40580 3337677 ~ 3341712 (-) True LOC110519358
TU1296047 lncRNA downstream 46621 3334109 ~ 3335671 (-) False G1137435
TU1296061 lncRNA upstream 10335 3395376 ~ 3395622 (-) True G1137444
TU1296084 lncRNA upstream 55398 3440439 ~ 3447354 (-) True G1137461
TU1296120 lncRNA upstream 82435 3467476 ~ 3467907 (-) True G1137483
TU1296124 lncRNA upstream 86438 3471479 ~ 3471809 (-) True G1137487
TU1296102 lncRNA upstream 92664 3477705 ~ 3484262 (-) True G1137472
XM_036942164.1 mRNA downstream 11565 3357724 ~ 3370727 (-) True LOC118938390
XR_005035687.1 mRNA downstream 11602 3353166 ~ 3370690 (-) False LOC118938390
XR_005035688.1 mRNA downstream 11602 3353166 ~ 3370690 (-) False LOC118938390
XR_005035689.1 mRNA downstream 11602 3353166 ~ 3370690 (-) False LOC118938390
XR_005035690.1 mRNA downstream 11602 3353383 ~ 3370690 (-) False LOC118938390
XM_036942259.1 mRNA upstream 2760 3387801 ~ 3406583 (-) False LOC110487344
XM_036942257.1 mRNA upstream 2761 3387802 ~ 3406577 (-) True LOC110487344
XM_036942254.1 mRNA upstream 28981 3414022 ~ 3420121 (-) False LOC110487174
XM_036942255.1 mRNA upstream 28982 3414023 ~ 3420088 (-) False LOC110487174
XM_036942253.1 mRNA upstream 28982 3414023 ~ 3420121 (-) True LOC110487174
TU1295655 other downstream 194108 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 251739 3129613 ~ 3130553 (-) True G1137174
TU1295328 other downstream 522251 2859031 ~ 2860041 (-) True G1136948
TU1294843 other downstream 859931 2521827 ~ 2522361 (-) True G1136568
TU1294826 other downstream 867374 2508263 ~ 2514918 (-) True LOC118938509
TU1296158 other upstream 143398 3528439 ~ 3532124 (-) True LOC110487308
TU1296425 other upstream 346580 3731621 ~ 3733300 (-) True G1137666
TU1296434 other upstream 380241 3765282 ~ 3765816 (-) True G1137672
TU1297095 other upstream 1009704 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 1234454 4619495 ~ 4619864 (-) False G1138232

Expression Profile