RNA id: XM_036942253.1


Basic Information

Item Value
RNA id XM_036942253.1
length 1750
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110487174
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3414022 ~ 3420121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCGGTAGTTGATTACTCTCGTCTAGATGATCACGTCTGACGACACTGAGGCGGAAGCCGGAAGAAAAACAACAACCAGTTTGTTTCATATTCTgagcttcttctttttttaaagagCACTACTATATACAATGGACGTGGTGGAGACCAAACTCACAGGGTCCCCTGGGCCCAAAGGTATCCATGGAGACCAAGTAATGCAGACCCTGAGGGGGGTGAAGCAGGAGGACTGTGGGCCCCTAACAACACCCCTAACAACGTACCTGAGTTTTGCCCATGTGAAaacagaagaagaggaggaagagacatGGGGTGTGGCTCACCCAAGTACAGGGTTCTTCAACGtcaagaaggaggaagaggaagaagccATAATATATCCTATACAGCCTAATGACAACCCAAGCCCCACTTCTGACATTACCAGCCACAGTTCTGACGACTCCAGCCCTGACAATGGCCCTAGAGCCACCCCTGACAATGGCCCTAGAGCCACCCCTGACAATGGCCCTAGAGCCACCCCTGACAATGGCCCTAGAGCCACCCCTGACCTGAACAACCCCCACCATAACAACGACCCCAGGTCTGGCCCTGCCGGTGGAGGGGCATCGGACAAGGACCCTGCATccagagaggaagatgaggaagatgaggagaggagcCCCCAGATCTCAGCAAACCCAGGGACTAAGCCCAACAAGACCAAAGGCGGTCATCAGAGGCCGTTCCCCTGCTCTAGGTGTGGGAAGCGTTTATCCACCACTGTTAGCTTAGACAAACACCAGGTCATCCACACCCGACTGAGACCGTACCCCTGCTCCGTACCGGCCTGCGCCAAGAGGTTCTGCTCACCAGCCgagctgaagagacacacactcacacacacagGAGAGAGACCCTTCCCCTGTCCAGACTGTGACAAGAGCTTCACCATACTGGCTGCTTTAAAGacccaccagagaacacacacaggagagagaccttACGTCTGTGAGGTGTGTGGGAAGgGCTTCGCCCAAACGGGGAACCTGAAATCCCACGAGCGCAGGCACACCGGAGAGAGACCGTTCTGCTGCTCCTTCTGTGGGAAGACCTTTGTAGAGTCTGGCCATCTGAAGAAGCACCAGCGTatccatacaggagagaagccgtacCACTGCAGCAGCTGCCCCATGAAGTTCCCTTCCTCCAGCGAGCTCAGGGTCCATGAGAAGATCCACAGCCAGGAGAAACCTCACAGCTGTTCCTACTGCGACAAGGCCTTCAAACAGCTGTCCAACCTCAAGCTCCACCAGAGAATACACTCTGACCAGAAGCCTTACGCCTGCTCCTACTGCGACAAGACCTTCCGTGCTCAGGGGACCTTAAAGGTGCACCTgaggactcacacaggagagaggcctTACCCCTGCTTCGACTGTGACAAGCGTTTCATCACGTCCTCAGAGTTGAAGGTGCACCAGAGGAttcacacgggagagaagccctTCTACTGCTacgactgtgggaagagttactATCAGCTGAAGCAGCTGAAGGAACATATGAAGTTCAACCCGGACCACAGCACCACACGTAGCGGACTCGGTAACATAGAGGACGAGGACAAGCTCTACTCTACATCACGTGATGATGTAACGATGTcttgatttcttttttttttagttGCCTAGAAAcagacattacatttttttttattgttttttttatttaactaggcaagtcagttaagaacacatttttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1296061 lncRNA downstream 18401 3395376 ~ 3395622 (-) True G1137444
TU1296012 lncRNA downstream 19918 3382263 ~ 3394105 (-) False G1137404
TU1296014 lncRNA downstream 19918 3382263 ~ 3394105 (-) True G1137404
TU1296024 lncRNA downstream 47115 3366423 ~ 3366908 (-) True G1137412
TU1296053 lncRNA downstream 72311 3337677 ~ 3341712 (-) True LOC110519358
TU1296084 lncRNA upstream 20318 3440439 ~ 3447354 (-) True G1137461
TU1296120 lncRNA upstream 47355 3467476 ~ 3467907 (-) True G1137483
TU1296124 lncRNA upstream 51358 3471479 ~ 3471809 (-) True G1137487
TU1296102 lncRNA upstream 57584 3477705 ~ 3484262 (-) True G1137472
TU1296100 lncRNA upstream 58946 3479067 ~ 3480384 (-) True G1137470
XM_036942259.1 mRNA downstream 7440 3387801 ~ 3406583 (-) False LOC110487344
XM_036942257.1 mRNA downstream 7446 3387802 ~ 3406577 (-) True LOC110487344
XR_005035701.1 mRNA downstream 28982 3382292 ~ 3385041 (-) True LOC118938420
XM_036942164.1 mRNA downstream 43296 3357724 ~ 3370727 (-) True LOC118938390
XR_005035690.1 mRNA downstream 43333 3353383 ~ 3370690 (-) False LOC118938390
XM_021559222.2 mRNA upstream 88161 3508282 ~ 3513160 (-) True LOC110487303
XM_036942179.1 mRNA upstream 101564 3521685 ~ 3532141 (-) False LOC110487308
XM_036942181.1 mRNA upstream 101564 3521685 ~ 3532141 (-) False LOC110487308
XM_036942177.1 mRNA upstream 113387 3533508 ~ 3554061 (-) False LOC110517154
XM_036942178.1 mRNA upstream 113387 3533508 ~ 3554061 (-) False LOC110517154
TU1295655 other downstream 225839 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 283470 3129613 ~ 3130553 (-) True G1137174
TU1295328 other downstream 553982 2859031 ~ 2860041 (-) True G1136948
TU1294843 other downstream 891662 2521827 ~ 2522361 (-) True G1136568
TU1294826 other downstream 899105 2508263 ~ 2514918 (-) True LOC118938509
TU1296158 other upstream 108318 3528439 ~ 3532124 (-) True LOC110487308
TU1296425 other upstream 311500 3731621 ~ 3733300 (-) True G1137666
TU1296434 other upstream 345161 3765282 ~ 3765816 (-) True G1137672
TU1297095 other upstream 974624 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 1199374 4619495 ~ 4619864 (-) False G1138232

Expression Profile