RNA id: TU1296165


Basic Information

Item Value
RNA id TU1296165
length 828
lncRNA type sense_over
GC content 0.50
exon number 2
gene id LOC110517154
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3533508 ~ 3554061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGACGACTGGGTCCGACAGAGAAACACTGGACGAGTCGTCGCAGGAAAccggaagagaggaacaggaagtggCGTGCGTGATGAGGAAGTTGGACCGGCGCGTGGGGAAGCTGTTCAGATCTCTACCTGACAACACCCTCAGCATCGTACTGCTGCCTGGTCACAACAGTTCCCATGGCGATGGTCTGTGTTTCCTGGAGGTCAAACAGGGGTCAGCAGCACTCAGTGACCACGCCCCCGACCTGATGCTACCTGCATAGGGTACCTTCCCAAGATTCCCAGGAATCCAGTTCCTTCCCAAGATTCCCAGAAATTCCGGTTGGAAGATTCTGGATTTCTTGCTTACTCCCTCCTGATTTCGTGAATCTTCCAAACGGGACATTTTGAGAAAGTTAACAGATGTTGGCAACACTTCGCCTGCGATACTGTGTTTTACCATCTTGGTGTGCTGTAGCCCAGCAGTGCTACAACTTGACTAACAAAGACAGCTCTAGGCTACGAGAGTATTAAGTCATGTTTTAAATAAAGAGGTGAGTCTACCTACGAGTGCTTGATATGTTTCGTTCAGTACAGGCTGGACAGGGTTTTGGACACAGGCAATGTGTCTgatatgacaccctattccctatgtagtgtgcaCTAtggccaccctattccctatgtagtgtgcagcctattccctatgtagtgtgcaCTATGGGCAggctattccctatgtagtgtgcaCTATGGGCACACCATGGGTCCTGGCAAAACTCTCTACAGGGAttattagggtgccattttggacgtaaACTCACTGTTTGACCTGTATTGCTGCTTCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1296152 lncRNA downstream 27221 3505633 ~ 3506353 (-) True G1137506
TU1296102 lncRNA downstream 49312 3477705 ~ 3484262 (-) True G1137472
TU1296100 lncRNA downstream 53190 3479067 ~ 3480384 (-) True G1137470
TU1296124 lncRNA downstream 61765 3471479 ~ 3471809 (-) True G1137487
TU1296120 lncRNA downstream 65667 3467476 ~ 3467907 (-) True G1137483
TU1296182 lncRNA upstream 14061 3550553 ~ 3551804 (-) True G1137527
TU1296183 lncRNA upstream 20458 3556950 ~ 3557949 (-) True G1137528
TU1296209 lncRNA upstream 60869 3597361 ~ 3598381 (-) True G1137542
TU1296211 lncRNA upstream 62285 3598777 ~ 3600123 (-) False G1137543
TU1296212 lncRNA upstream 62285 3598777 ~ 3600123 (-) True G1137543
XM_036942179.1 mRNA downstream 1433 3521685 ~ 3532141 (-) False LOC110487308
XM_036942181.1 mRNA downstream 1433 3521685 ~ 3532141 (-) False LOC110487308
XM_021559222.2 mRNA downstream 20414 3508282 ~ 3513160 (-) True LOC110487303
XM_036942254.1 mRNA downstream 113453 3414022 ~ 3420121 (-) False LOC110487174
XM_036942253.1 mRNA downstream 113453 3414023 ~ 3420121 (-) True LOC110487174
XM_036942161.1 mRNA upstream 36470 3572962 ~ 3580897 (-) False LOC110524887
XM_036942163.1 mRNA upstream 36470 3572962 ~ 3582405 (-) False LOC110524887
XM_036942159.1 mRNA upstream 36470 3572962 ~ 3584380 (-) False LOC110524887
XM_036942160.1 mRNA upstream 36470 3572962 ~ 3584380 (-) True LOC110524887
XR_005035407.1 mRNA upstream 162252 3698744 ~ 3700326 (-) False LOC118938144
TU1296158 other downstream 1450 3528439 ~ 3532124 (-) True LOC110487308
TU1295655 other downstream 345390 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 403021 3129613 ~ 3130553 (-) True G1137174
TU1295328 other downstream 673533 2859031 ~ 2860041 (-) True G1136948
TU1294843 other downstream 1011213 2521827 ~ 2522361 (-) True G1136568
TU1296425 other upstream 195129 3731621 ~ 3733300 (-) True G1137666
TU1296434 other upstream 228790 3765282 ~ 3765816 (-) True G1137672
TU1297095 other upstream 858253 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 1083003 4619495 ~ 4619864 (-) False G1138232
TU1297677 other upstream 1621673 5158165 ~ 5162954 (-) True G1138568

Expression Profile