RNA id: TCONS_00004057



Basic Information


Item Value
RNA id TCONS_00004057
length 4423
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_002083
representative False

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21650828 ~ 21820133 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTAAACAGAAATATGTCATCGATACACTGCTTGGGATTTTGTAATGGGTCTGATTATTTTAAAACGCTGAGAATATTTGGATAAAAGGTCGAAAGCTTAGAGTCAGAGACGATGGAATCTCTGATCTTTTTGAGGAGGATTTGGTGGTGctgtttctttattatttcttgGAGTACAACGGAGGCGCAGATTCGATACACAATTCCAGAGGAGCTAAGAGAAGGATCTGTTGTCGGAAATATTGCTAAAGACCTCGGTTTGGATGTATCTAAGATTTCAGGTCGTAAACTACAAATAGCGTCTGAGACTGGTAAGCAGTATTTCGCTGTGGATGTGGAAAAGGGTGATCTTACTGTGAATGAGAGAATTGATAGAGAAGATGTATGTGGATACAACGTCCCTTGTGTTTTGCCTCTTCAAGCCGTTTTAGAAAATCCTCTGCAGATGCATCGAGTTGAGATTGAAATACAAGATATTAATGACAACGCGCCCAATTTTAAATCTAATGAGCGTGTACTGAATATTCCTGAATCTATAAATTCAGGAGCAAAGTTCCTCTTAGAAATCGCTATTGACTCAGATGTACAGTCTAATTCGTTAAAATCATACAGTCTGAGTACAAatgataattttgttttaaatgtgaaaacacaAGATGGAGTTAAAATTCCAGAATTAGTACTCAAGCTACCTCTTGACCGAGAAAAACAGGCAGTTCATAAGCTAATATTAACGGCAGCTGACGGAGGAAATCCAGTGCGCACGAGCACATGTGAAATCACTGTTGTGGTTTTGGATAATAATGACAATGCACCCGAATTTGAAAAGCCTTTTTATGAAACTGTTGTTGATGAAAACGAATCAACTCAGAAAGAAATAGTAGCAGTCAAGGCTACAGATTTAGATGAAGGGTTAAATGGAGAGATCGAGTATTTCTTTGCAGACCAAACACCAGATACAGAATTGTTTAATATTAACAAGCAAACCGGTGCAATAACAGTTAAAAAACAACTGGACCATGAAAAAGCAAGCTTACATAAATTTGATATAGTTGCAAAAGACAAAGGCAATCCTCAAATGGAGGGTCACTGCAGTGTAAAGATAAAAGTTAATGATGTGAATGACAACGCGCCTGATATAATAATTACTTCTCTCTCAAGTCCGATTCCTGAAAATTCCACAAATGGCACGGTCGTTTCATTAATTAGTACAAAGGATGCAGATTTAGGAGAGAATGGGAAAGTTAAACTTACGTTAGCGCCTGGACTACCGTTTAGATTTAGCCCTACATTATCTAATCATTACGCATTGGTTACCAACGGTCCTCTAGACAGAGAAAACTATCCTGAATATAACATTGAACTAAACGCAGTTGATGGTGGTTCGCCACCGCTGTTTAGTAGGAAAACAGTAAAAATCAGCATTTCAGATGTAAATGATAACCCTCCAATATTCACAGAAAAATCTTATACGGTTTATGCTAAAGAAAACAGCGCTCAAGATTCAATATTGTGCTCAGTCTCCGCACATGACCCAGATTTAGGCGAAAATGCAAAACTCTCCTACTCCGTTTTGGACTCTAAAGTTAAAGACGTGCCAGTGTCTTCTTACATCTATATAAATTCTGAAAATGGAAGTATATATAACTTGCAGACATTtgattatgagaaaattaaagttttaaacaTCATAGTTCAGGCTAAAGATCATGGCTCTCCATCTCTGAGCAGCAACGCAACTGTCAATGTGTTTATTCTGGACCGGAACGATAATGCACCTGCTGTCATTTACCCGTCCTCATCTATGGGCTCGGTCTCTCATCAGAGGATGCCCCGTTCCGCTAAAGCAGGACATCTCGTTACTAAGGTAACGGCAGTGGACGCGGACTCGGGTCATAACGCCTGGCTGTTCTACAGGCTCGCGGAGGCCACGGACCCGTCTCTGTTCAGTGTGAATTTACATACGGGAGAGGTGAGGACTAAACGCGCTGTTTCAGAGCACGACGACTCCTCTCAGAGACTGGTCATAGAGATAAAGGATAATGGAGAACCAGTGCAGTCCACCACAGTCACAGTGGATATACTGATAGAGGACGGGTTTCATGAGCCCATATCAGACTATCGTTTAAAAACTACAGAAGACAACAAGAAAACTGGCAAAATTACGCTGTATTTGATCATCTCATTGGGAACAGTGTCAGTTTTGTGTTTATTGACCTTTTTCGCGTTGgttgtaaaatgtgttaaaagcaGCATCGGAAGTTCAAGCTGCTGCATCAGACGAACTGATTCTGGATACAAAAACCCCAACAGAAACCTGCAGATCCAGCTCAACACTGACGGGCCCATTAAGTATGTGGAGGTTCTGGGAGGAGATATGATGTCTCAGAGTCAGTCCTTTGGCTCTTATCTCTCTCCAATGTCCGAATTCAGTGATCTCACTCTCATTAAGCCCAGCAGCACAACAAACTTTACAGACACGCTAAACACGCTTGATGCGTCATTACCAGACAGCGCGTGGACATTCGAGAGCCAACAGCAAAAGCCACCTAATACTGACTGGCGATTTCCCCCAAACCAGAGGCCTGGACCCAGCGGGGCTGGAGCACGTCCTGAAGAGGCAGGTGCCGGTGCTGGTGTGATAGCAGGAACAGGACCATGGCCCAACCCCCCTACTGAGGCTGAACAGCTCCAGGCTATGATGGCAGCAGCAAACGCAAGTGAAGCCACTGCGACTCTTGGCCCTCGCTACAATCTACAGTATGGCCCGGATTACCGTCAGAACGTCTACATCCCAGGCAGCACTGCCACCCTTACAGCCAACCCTCAGCAACAGGTTCTCCAGCAGGCCCTTCCTCCACCACAGGCCCTTCCACCTACCGAAGCCCCCAAAGCGGCTCAAACACCAGCCAGTAAGAAGAAACCCACAAAGAAAGACAAGAAGTAAGACCTGTGGAATAGCTGAAGAAACATGTTGCCGGGAATCTAAACATCTATCCTCTCAAACCATGTTGGGTTTGGATgaagatttaaaaagaaaaaagtgaataGTATTACTTGTTTTAGCGTTAACATGAGACAATAAGCAACCAAACAAGAGGAAATGTGTTCAGATTCCCGAAGCCATTTCTCTGACAGATATCTCTGTCTTGTAAATAGCATACTAAAACAAGAAGAAACacatttcttctttttattttttccctcaaatgTCACGTTTTAGGCTTTTTGTGTTCTTTTCAAAGCAAAGTAGATGCTTATTGTGGATACAAAATGAAACGCTGTTAGGCTTTTTAACATGATGTGCCACAACTCTCACCTTAACTGAAGAAAGGAGTATTGAGCTGAACTATGCATTGCAAAGGAGATACAAAAGGTGAACGTATATATAAAGTGTTTTCCAGGTGAGATAATACATGTATATTTGCGTAAAAAAATCTGACGGTGAGACACTGGATTGTCGGCATGGTGTTTAAAAATAGATTCAGTCTTCTCATTAACTTCTTAATAGCCAGTTAAGCAGAGCTGAATGTTAGGTTAATGACGTTTGACTATTCTTTGTTATTATTTCCTGTTGGCGTGCTAAAGAATCCTCTGGAAATGAAGTAatgtaaacagtgtttttttgATGCTGAGAAAAGATAATCACAGCCTTTGTAAGGTCAATGATTTGGGTCAAAGGAAGAAGATCTAAAGAAGGAAACAGCAGAAATGTGCTTGAATGGATCTTAGATGGAAGGATTTCATGTCTGTTCATCTGCACCTACCACCACTATCGTGTATATAAAATGTGTAACCTGTCTGTACAAACATTAGAGCCACAAGGGCTGGCTGTTACAGGAATGTTTcagtattttttacaaaaaaaagcaacaaaaaaagacactagaaaaaaaaaagatccagtgTAGTGTTTTAGGAATAAAAGCTTCAAGTCCATCGACTAACCAAACTGTACATACTACGAAACTTCTGATGACACGCAATCGTAGCTTAAGGCTTGTGGAGTATGTGCATATTTTTGTGTTTTCCCCCTCTTGATTACACTTTACTTTCCTCTTCTCCAATCACCTAAACCTTTGAAAGATAACAGACAATACTTATACTGTCTTTGCTATAGAGTAACACCCTTTCCTATCTTACTGTACTTTTCTGTGCTTGTAATTCCAATCAGTCCTTAATGATACTGGAATGCCACTCCTGTCTGTTTGACTttgaatatctatctatctatatatatataaatgtctgTCTGCTGCTTGGCTACTTTTTCTGTATTTGACTGTGATTCCTTTAAAGAAACGCTTAGCACCTCATGttactctttttattttataatctacTATTTATATCGCTGTTTGATTtatgttttactttattattggaacacttacatttgaaataaaattttgTCAGAACTCACA

Function


GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2695 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000163077

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005705 lncRNA upstream 31406 21745262 ~ 21745505 (+) True XLOC_002088
TCONS_00004043 lncRNA upstream 102453 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004041 lncRNA upstream 102611 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004040 lncRNA upstream 104572 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00005879 lncRNA upstream 233349 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004074 lncRNA downstream 47247 21867307 ~ 21868226 (+) False XLOC_002089
TCONS_00004076 lncRNA downstream 47273 21867333 ~ 21868723 (+) True XLOC_002089
TCONS_00005706 lncRNA downstream 86092 21906152 ~ 21906377 (+) True XLOC_002091
TCONS_00005880 lncRNA downstream 94575 21914635 ~ 21944085 (+) True XLOC_002092
TCONS_00005881 lncRNA downstream 97817 21917877 ~ 21945344 (+) True XLOC_002093
TCONS_00004052 mRNA upstream 47665 21726853 ~ 21729246 (+) True XLOC_002087
TCONS_00004051 mRNA upstream 51599 21722892 ~ 21725312 (+) True XLOC_002086
TCONS_00004044 mRNA upstream 77736 21677058 ~ 21699175 (+) False XLOC_002083
TCONS_00004037 mRNA upstream 100492 21668606 ~ 21676419 (+) True XLOC_002084
TCONS_00004033 mRNA upstream 127739 21588002 ~ 21649172 (+) True XLOC_002082
TCONS_00004075 mRNA downstream 47247 21867307 ~ 21870457 (+) False XLOC_002089
TCONS_00004077 mRNA downstream 79693 21899753 ~ 21909696 (+) True XLOC_002090
TCONS_00004079 mRNA downstream 183690 22003750 ~ 22031921 (+) False XLOC_002096
TCONS_00004080 mRNA downstream 192329 22012389 ~ 22031866 (+) True XLOC_002096
TCONS_00004081 mRNA downstream 214417 22034477 ~ 22045119 (+) False XLOC_002097
TCONS_00004038 other upstream 102622 21670831 ~ 21674289 (+) False XLOC_002085
TCONS_00004042 other upstream 102622 21671222 ~ 21674289 (+) False XLOC_002085
TCONS_00004039 other upstream 103890 21670857 ~ 21673021 (+) False XLOC_002085
TCONS_00004021 other upstream 333499 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004020 other upstream 340935 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004078 other downstream 160487 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004086 other downstream 215101 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004103 other downstream 1027212 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004107 other downstream 1071123 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004117 other downstream 1597773 23417833 ~ 23417947 (+) True XLOC_002122

Expression Profile


Expression of TCONS_00004057 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.
//

Expression of TCONS_00004057 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU486965 True 6166 lncRNA 0.41 2 CI01000304 9471070 ~ 9497593 (-)