RNA id: XM_036939880.1


Basic Information

Item Value
RNA id XM_036939880.1
length 3295
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC110485446
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4098921 ~ 4114272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTGTAATTCTTCACCGCCTCCTTCGCAATCACCGATTGGTTACTTTAGGAGGGAAGACTGCTAGAAGGTTTGATGCCCACTTTCTGCGCCCTCCCCACACTTCGCCTTTCTCATCTTCCCGCTTCTGCGCAACTCTGCTCGGCCTAACTACCTGTCCAAACCccccgtgtgtgtctgtgtattttcCCCAAGAGAGCAAGCAGCATGTCGGACTACGGCTCACCCGGGGCCGGAGCGGGCGCTGGAGGCAAAAAAGATGCTTTCGCGGACGCCGTGCAGCGAGCCAGACAGATTGCAGCTAAGATCGGAGGAGATGCCGGACCTCCAAGTAACaatggaggagcaggaggaggagagggcttcCCGTTCCAAACACTGAAACGCTCTCTGGAGGATGGAGACCAACCAGATGCCAAGAAGATGTCTTCCCAGGGGGACAGAGACTCAGCCACTGCTTTGTCTATCGGAGCTCAGCTCGCTGCCCTGTCTCAGCAAAGTGTCAGACCCTCCACTATGACAGAGGAGTACAGAGTGCCAGACGGCATGGTCGGACTCATCATTGGTCGGGGGGGCGAGCAGATCAACAAGATCCAGCAGGACTCGGGCTGCAAGGTCCAGATCGCTCCAGGTGAGCAACTAGACAGTGGTGGCATGCCAGAGAGGAGCGTCTCCCTCACAGGAAACCCTGACGCCATCGCGAAAGCCAAGATGTTTCTGGATGAGATTGTATCTCGGGGGCGCGGTGCTCCTTCCTCTTCTTTCCACGAGTCGACCAATGGGCAGAGTGGCTCCATGCAGGAGATGATGATCCCAGCTGGCAAGGCCGGCCTAATCATCGGCAAGGGAGGAGAGACCATCAAACAACTGCAGGAGCGTGCTGGAGTGAAGATGATCCTCATCCAAGATGGTTCCCAGCCACCCAACATGGACAAACCCCTGCGCATCATCGGAGACCCCTACAAAGTACAGcaagcgAAGGAGCTGGTGAATGAGATtctgagagagagggatcacGCTGGCTTTGGAGACCGAAACAATTTTGGCAACCAAATGGGGGGAggcggtggtggaggaggaggaggcatggaTGTGCCCGTGCCCCGCCACTCTGTGGGAGTTGTGATTGGTCGAAGTGGAGAGATGATCAAGAAGATCCAGGCAGACGCTGGAGTTAGGATACAGTTCAAACCAGaTGAAGatGAAGatgacGGTGCAGGTCCTGATAAGATAGCCCACATCATGGGCCCTCCAGACCGCTGTGAGCATGCTGCCTCCATCATCAACGAGCTGCTGCAGAGCATCAGAGTCAGGGAGGACGGAGGACAGGGGGGTCCTCCAGGTCCACCAGGCACGGGGGGGATGCCTCAGGGTGGCCATGGCAGGGGGCGAGGCCAGGGCAACTGGGGCGGTCCTCCGGGAGGTGAAGTCACCTTCTCTATCCCCGCCCACAAATGCGGCCTGGTGATTGGTCGGGGTGGCGAGAACGTCAAGGCCATCAACCAGCAGACGGGGGCTTTTGTGGAGATCTCGCGTCAGCCGCCGCCCAACGGGGACCCCAACTTCAAACTGTTCATCATCAGGGGGTCCCCTCAACAAATAGATCACGCCAAGCAGCTCATAGAGGACAAGATCGAGGCTCCTCTGTGTCCTCTAGGGGGAGGTCCTGGGGGACCTGGTCCAGCTGGTCCAATGGGCCCCTACAACCCCAACCCTTACAACCCAGGGCCTGGTGGCCCCGGAGGACCCCCGCAtgGCGGCCCCCCAGGTGGGCATGGTTATGGGGCCCCTCAGGGCTGGGGAAACACCTTCCAGCAGTGGCAGGCCCCTGGAGGGCCACACGACCCCAACAAGGCAGCAGCAGACCCCAATGCAGCGTGGGCAGCCTACTATGCGCAGTACTACCAGCAGCAGCCAGGGGGCGCCATGCCGGGCCAGGCCCCCAACGCCCCAGCAGCTGCCCCAGTCCAGGCAGACCCCTCCCAGGCAGCCCAGACCCCTGGAGGCCAGCCAGACTACACCAAGGCCTGGGAGGAGTATTACAAGAAGATGGGCATGGcCCAGCCCGGTGGAGGTGCTGCAGCAGCGCCGGCTGCAGCCGTGGCCGGGGGAGGAGCCGGCGGACAGCAGGACTACAGTGCAGCCTGGGCTGAGTACTACAGGCAGCAGGCGGCCTTCTACGGCCCTGGAGGGGCTCCGGGACAGGCTGCCACCCCACAGCAAGgacaacaggcccaGTGAACCAAATCCAGCCAGTCTCAAGCCTGTTAGATGCGGACCGGGAGGACTGTCTCTTCACTGCAGCCTCATCCCATCCAGCTCTCTggactttttaaatgttttcttcTGGGTTTAAGTAATTCAAAAAATGTCTGGTTTTGACGGAAGCAAAACCTTAATTCCCTCCCTCCAATACACTCCCAGTACCCTCCCTCTTATCCCAGTACCCCTTCTTCTCTTCCCCTAAAAATTCCCCTTTTCTTTtttacaaaaactgaaaaataacaaattctacgattttattttttatttttttgctgatgaAATGATTGAACAACCAGGTAGGGTTGTTTTTCCTTTGTCCTCACCCTTCACCCCAACCCCTAGTGTCTGCCTGTCCTCTCCCTGCATCCCAACTAGTGTCTGCCTGTCCTCACCCTGTACCCCAACTAGTGtctgaggaggggaagagaagaagaggggaagaTGGTAAAGAGCTCCTGCTCATTGGCCTCGCTAATACCCATCTGTAAAATACATGGACTCGCACTTCTgtcatttgtttgtttttcctGAGGAATAAACTGTCGTCTAGCAGTACTTTGGAGTATAACTATTACTAATATTCAGCATCAGTTTGTAAAAACGAGTTGTTTTTTTGCAAGCAAAAGGATATTTTTTTGCTTTTTAggcttttattttcatttttaattaacgTCTAGTTCAGTTAAAACATTCCCTGTGTTGATGAAGTAGCagcatttttttcccccctccccccacccactTATAATTTTACTTAGTTGATATTTTTCAGTAACTAAAGGGTGGTCCTGGGTTTGTGTGCCTGTGCGACTGACTGTGTGTACAAGCCCCTGTTTCTATGGATGCTTGCTACAGTGTGTGCCTGCTTGTTATGTTGGTTGTTTTGGCACAGTTTGTGTCCCCGAGGCCCCCGTCCCCTTGCTGACTTCAGATCAGATTGCTGCATCATCAGATGGGATACCTTTTATTTTTCCTCGTGTTCCAAGAAGTCGTTATGTATGTTgtatgcctttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1296999 lncRNA downstream 14325 4084295 ~ 4084596 (-) True G1138065
TU1296998 lncRNA downstream 15976 4082580 ~ 4082945 (-) True G1138064
TU1296996 lncRNA downstream 17887 4080814 ~ 4081034 (-) True G1138062
TU1296952 lncRNA downstream 24216 4074185 ~ 4074705 (-) True G1138022
TU1296994 lncRNA downstream 29622 4068865 ~ 4069299 (-) True G1138060
TU1297004 lncRNA upstream 14938 4129210 ~ 4129587 (-) True G1138070
TU1297011 lncRNA upstream 38655 4152927 ~ 4154165 (-) True LOC118938148
TU1296931 lncRNA upstream 74020 4188292 ~ 4189370 (-) True G1138001
TU1297025 lncRNA upstream 106514 4220786 ~ 4221203 (-) True G1138085
TU1297028 lncRNA upstream 112414 4226686 ~ 4227530 (-) True G1138088
XM_036939887.1 mRNA downstream 208 4057033 ~ 4098713 (-) True LOC110487221
XM_036939885.1 mRNA downstream 212 4057033 ~ 4098709 (-) False LOC110487221
XM_036939886.1 mRNA downstream 215 4057033 ~ 4098706 (-) False LOC110487221
XM_021594034.2 mRNA downstream 78395 4019218 ~ 4020526 (-) True LOC110514885
XM_021594035.2 mRNA downstream 78397 4019218 ~ 4020524 (-) False LOC110514885
XM_036939889.1 mRNA upstream 3492 4117764 ~ 4152718 (-) False LOC110493393
XM_036939890.1 mRNA upstream 3492 4117764 ~ 4152718 (-) True LOC110493393
XR_005035410.1 mRNA upstream 38963 4153235 ~ 4154217 (-) False LOC118938148
XM_036939891.1 mRNA upstream 48466 4162738 ~ 4165860 (-) True LOC118938149
XM_036939892.1 mRNA upstream 56556 4170828 ~ 4185204 (-) True LOC118938150
TU1296434 other downstream 333105 3765282 ~ 3765816 (-) True G1137672
TU1296425 other downstream 365621 3731621 ~ 3733300 (-) True G1137666
TU1296158 other downstream 566797 3528439 ~ 3532124 (-) True LOC110487308
TU1295655 other downstream 910737 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 968368 3129613 ~ 3130553 (-) True G1137174
TU1297095 other upstream 280473 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 505223 4619495 ~ 4619864 (-) False G1138232
TU1297677 other upstream 1043893 5158165 ~ 5162954 (-) True G1138568
TU1297653 other upstream 1086783 5201055 ~ 5262513 (-) False G1138553
TU1297654 other upstream 1086783 5201055 ~ 5257523 (-) True G1138553

Expression Profile