RNA id: XM_036939892.1


Basic Information

Item Value
RNA id XM_036939892.1
length 1510
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC118938150
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4170828 ~ 4185204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGGTTTTCtgagctccctctctcttttccccccccAGGCAGTTAATATTCATTTTCCAGCGCTTTTATCCTCTACCAACCCACGACGATTCGAAACGACAAccgggaggagtgtgtgtgttgtgccatCCGATCCATCTCGTTCGCGGGTCATGACGCTCGAGGCGATCCGTTACCGGGCCGGGTCTCTGCAGATTCTTAACCAGCTACTCCTACCGCAGGAGACTGTGTTCGACGAGGTCCGCACAGTGCAGGACGGCTATGAAGCGATCAAGTCCATGAAGgtaCGAGGGGCTCCTGCCATCGCCATCGTAGGCTGTCTGAGCCTGGCAGTGGAGCTGCGCGCAGGTGCCGGGGGCAACGACCCCGTGACCTTCATCCGGGAGTCTCTGTGTCACCTGACTTCTGCAAGACCCACGGCCGTCAATATGGGCCGGGCCGCCCGAGAACTGATGGAGTTTGCCGAGAACGAGAGCATGGAGAAAAACCCAGAACAACTCacagagagTGTGATTGGCTGGATCGAGGAGATGCTGGAGCGGGATGTCAATGACAACAAGAAGATCGGTAACTACGGAGCTCAGCACATCCTGTCTGGTGTTCCCCGAGACTCTGTCACTATCTTAACTCACTGCAACACCGGGTCACTGGCCACGGCAGGATACGGCACCGCACTGGgtgtGGTGCGTTCCCTCCATGCTCTCGGCAGACTGAAGCGGATGTATTGTACAGAGACCAGACCCTATAACCAAGGGGCCAGACTGACAGCCTATGAGGCCGTGGCTGAAGGTTTCCCTGCTACTCTCATCACAGACAGCATGGCTGCACTCACCATGAGAGAGAAGAGCATCACAGCTGTTGTCGTAGGGGCGGACAGGGTGGTTGCTAACGGTGACACGGCCAACAAAATCGGCACGTACCAGCTGGCCATCGCCGCAAAGCACCATGGGATCCCGTTCTACGTGGCGGCGCCCAGCACGTCATGTGACCTGAGTCTGGAGAGCGGCCGACACATTGTCATCGAGGAGCGTCCCGCCGAGGAACTCACCAGCATCAACGGAGTACCAATCGCTGCCccaggtaTTGATGTATGGAACCCGGCGTTTGACGTGACCCCCCACCAGCTGATAACGGGGGGCATCATCACAGAGCTGGGGGTGTTTCTGCCCTCGGAGCTGCAGGCAGCACTCACCGGCCGTCTCACTGCCCTGTAGACGGCGCTATCACCACCCGCTGGCCGCCGTGCGCTACTGCACCTTAATATTcctgctctcactctctcatacGACTTCCAcgtcctcacacacacagctgatgtGGAAGTCTAGTTTtgttacatttacacacacacagtcagtgttCTACAAACTCACACGTTTtacggtctcacacacacacacacatcaacgcaggaactcagacacacacatccaACCCCCTCCCactcctgtccctccctctctctcctctctggtctctcctgtgttcatctcctgtctctcctctct

Function

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046523 S-methyl-5-thioribose-1-phosphate isomerase activity molecular_function

KEGG:

id description
K08963 mtnA; methylthioribose-1-phosphate isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1297011 lncRNA downstream 16663 4152927 ~ 4154165 (-) True LOC118938148
TU1297004 lncRNA downstream 41241 4129210 ~ 4129587 (-) True G1138070
TU1296999 lncRNA downstream 86232 4084295 ~ 4084596 (-) True G1138065
TU1296998 lncRNA downstream 87883 4082580 ~ 4082945 (-) True G1138064
TU1296996 lncRNA downstream 89794 4080814 ~ 4081034 (-) True G1138062
TU1296931 lncRNA upstream 3088 4188292 ~ 4189370 (-) True G1138001
TU1297025 lncRNA upstream 35582 4220786 ~ 4221203 (-) True G1138085
TU1297028 lncRNA upstream 41482 4226686 ~ 4227530 (-) True G1138088
TU1297041 lncRNA upstream 68463 4253667 ~ 4253884 (-) True G1138101
TU1297044 lncRNA upstream 79116 4264320 ~ 4264547 (-) True G1138104
XM_036939891.1 mRNA downstream 4968 4162738 ~ 4165860 (-) True LOC118938149
XR_005035410.1 mRNA downstream 16611 4153235 ~ 4154217 (-) False LOC118938148
XM_036939889.1 mRNA downstream 18110 4117764 ~ 4152718 (-) False LOC110493393
XM_036939890.1 mRNA downstream 18110 4117764 ~ 4152718 (-) True LOC110493393
XM_036939882.1 mRNA downstream 56556 4098921 ~ 4114272 (-) False LOC110485446
XM_036939893.1 mRNA upstream 5033 4190237 ~ 4224636 (-) False LOC110495043
XM_036939894.1 mRNA upstream 5033 4190237 ~ 4224638 (-) True LOC110495043
XM_036942557.1 mRNA upstream 51587 4236791 ~ 4237823 (-) True LOC118938514
XM_036942600.1 mRNA upstream 59113 4244317 ~ 4245773 (-) True LOC118938533
XM_036942601.1 mRNA upstream 68821 4254025 ~ 4254852 (-) True LOC110495042
TU1296434 other downstream 405012 3765282 ~ 3765816 (-) True G1137672
TU1296425 other downstream 437528 3731621 ~ 3733300 (-) True G1137666
TU1296158 other downstream 638704 3528439 ~ 3532124 (-) True LOC110487308
TU1295655 other downstream 982644 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 1040275 3129613 ~ 3130553 (-) True G1137174
TU1297095 other upstream 209541 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 434291 4619495 ~ 4619864 (-) False G1138232
TU1297677 other upstream 972961 5158165 ~ 5162954 (-) True G1138568
TU1297653 other upstream 1015851 5201055 ~ 5262513 (-) False G1138553
TU1297654 other upstream 1015851 5201055 ~ 5257523 (-) True G1138553

Expression Profile