RNA id: XM_036939931.1


Basic Information

Item Value
RNA id XM_036939931.1
length 1556
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110485443
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5128224 ~ 5141579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGTAAACTGCAGCACACTGGTATTGTAAGGTGCAGCACTTTAGTGTTGCATGAGttttagaccattccattggttCGAGGTAAATCTCCACCCACCTGGGGCATCTGCTAAGCAAAACCAGCTGGACCACTGCTTCAGGTCTCTCAGTGACAACAGGGGACAACAATATACAGATCTGTGCAACACTAAAATAGTAGAAATGGAACGAGGAAGGACTCTGAAGATTCTGTTCCTGTTGACACTCTGTCTGCAAGACTTCACTGGTCAATgccaagTTTCAGGGCAGCTCTCTGACCTGAGGATAGTTCTGGTGGGGAAGACTGGATCAGGGAAGAGTGCAACAGGAAACACCatcctggggagggaggggtttAAAGAAGACTCCTCCCCTGAGTCTGTTACCTCACACTGTATGAAGCAGAGTGGAATGGTGGCTGGAAAGAAGATCAATGTGATTGACACACCAGGACTATTTGACACAAAATTGACTGATACGGAAATGAAAAGTGAAATAGAAAAGGCCATCTACATGTCAGTCCCGGGACCCCACGTCTTCCTGCTGGTGATCAGACTTGGGGTAAGgttcacagaggaggagaggaacactgTGAAGTGGATCCAGGAGAACTTTGGAGACGAAGCCTCAATGTACACCATCTTGCTGTTCACTCATGGAGATCAACTGAAGGGAAAATCAGTGGAGGAGTTTCTGGCTGAGAGCAAAGAGTTACGGAAACTCATCAATATCTGTGGGGGCAGATATCACTCCCTAATCAATGACAAGAGAAAACACAACACTCAGGTCCCAGAGCTGCTGAAGAAGATAGACAGGATGGTGATGAAGAATGGAGGACAACACTACACCAATGAGATGTACCAGGAGGCCCAGAGGAAGatcgaagaggaggaggagaggaagaaacaggaagaggataagagagagaaagagaggcaacagaaggagagagaaaggatcaGAAGAGAAGAAATATTGTCTCGATGCAAGATATCAGCATTGGTCAGTTCGGCAGTATTGGGGTGGGGATACAAATTCTCATCTCCATTGTGGTTAGCAGCAGGATCTGTATCAGCCATTTTTGAAGGTTATCAATGCATGGATGCTTATTTCAATTGGGGTGGTTCTGACCCAAAAGAGCACGAGGAATAGGATttcaccatctcagattgttctgaagttAAGGTTAGTTTTCAAgctatttttttgggggggggggtggaaatataatttgatcactgagaaattaagctaattgattgcacccaaattggctaTTTTAATTGATaagatattcaataaatatacactatatatacaaacgtatgtggacaccccttcaaatgagtggtttcggctatttcagccacaccccgtTGCTGACAGATTTATAAAATCGAGcagacagccatgcaatctctatagacaaacattggcagtagaatggccttactgtatTATTTAGTACTTTTATGTATTCTTGGCATTTCTGTCCCTTTATGACATTTGTCTCCCTCATAGCATAAACCATTTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1297675 lncRNA downstream 3405 5112352 ~ 5124824 (-) True G1138566
TU1297664 lncRNA downstream 33786 5092620 ~ 5094443 (-) True LOC110485437
TU1297731 lncRNA downstream 43695 5082047 ~ 5084534 (-) True G1138612
TU1297729 lncRNA downstream 51067 5076568 ~ 5077162 (-) True G1138611
TU1297728 lncRNA downstream 53255 5074531 ~ 5074974 (-) True G1138610
TU1297683 lncRNA upstream 1853 5133317 ~ 5133858 (-) True G1138574
TU1297738 lncRNA upstream 13133 5144597 ~ 5146150 (-) True G1138619
TU1297739 lncRNA upstream 14799 5146263 ~ 5146636 (-) True G1138620
TU1297681 lncRNA upstream 40985 5172449 ~ 5190371 (-) True G1138572
TU1297748 lncRNA upstream 91292 5222756 ~ 5228090 (-) True G1138628
XM_036939929.1 mRNA downstream 13033 5112831 ~ 5115196 (-) True LOC118938158
XR_005035416.1 mRNA downstream 33878 5092615 ~ 5094351 (-) False LOC110485437
XM_036939925.1 mRNA downstream 66710 5058451 ~ 5061519 (-) True LOC110513280
XM_036939924.1 mRNA downstream 73124 5028078 ~ 5055105 (-) True LOC110513279
XM_036939923.1 mRNA downstream 127438 4943129 ~ 5000791 (-) True gcgrb
XM_021556506.2 mRNA upstream 7120 5138584 ~ 5141623 (-) True LOC110485440
XM_036939930.1 mRNA upstream 17776 5149240 ~ 5155100 (-) True LOC118938159
XM_036939933.1 mRNA upstream 36865 5168329 ~ 5177917 (-) True LOC118938161
XM_036939934.1 mRNA upstream 69015 5200479 ~ 5211509 (-) True LOC118938162
XM_036939939.1 mRNA upstream 84947 5216411 ~ 5244436 (-) False LOC118936520
TU1297206 other downstream 508365 4619495 ~ 4619864 (-) False G1138232
TU1297095 other downstream 706969 4394745 ~ 4421260 (-) False G1138151
TU1296434 other downstream 1362413 3765282 ~ 3765816 (-) True G1137672
TU1296425 other downstream 1394929 3731621 ~ 3733300 (-) True G1137666
TU1296158 other downstream 1596105 3528439 ~ 3532124 (-) True LOC110487308
TU1297677 other upstream 26701 5158165 ~ 5162954 (-) True G1138568
TU1297653 other upstream 69591 5201055 ~ 5262513 (-) False G1138553
TU1297654 other upstream 69591 5201055 ~ 5257523 (-) True G1138553
TU1297671 other upstream 86227 5217691 ~ 5244404 (-) True LOC118936520
TU1299312 other upstream 539996 5671460 ~ 5672247 (-) True LOC118938515

Expression Profile