RNA id: XM_036939938.1


Basic Information

Item Value
RNA id XM_036939938.1
length 1830
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118936520
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5216411 ~ 5244441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTAAACTACAGACTGCAGCCATTTCAAGAGTTACAGAAAAACCACTTGAGCTGGTAAACTACAGACTGCAGCTATTTGAATTGCAAACGTAAGCAAGAAGATGAACAGAATGGCAAGAAGTGATCATCCAACTCATTCACATTTGGTGGAAGATGAGACATGGTTCGGACAGCCAGCTGATCTGAGGATAGTTCTGTTGGGGAAGACTGGAGCAGGGAAGAGTGCAACCGGAAACACCATCctgaggagagagtggtttactTCTGAGTCAAGTCCAAATCCAGTGACTGAAAAGTGTGAGAAACAAAGTGGAGTGGTGGATGGGAGGAAGATTTATGTCATCGACACTCCTGGGATCGATGACACATCATTGACAGACACATATTTGATTTATAAAATATGGAAACAGTTTCGGAGAACAGATAAAGTCGAAATAGAGAAATCCATCAAGATGTCAGTTCCAGGACCCCATGTGTTTCTGCTGGTGATCAGACTGGATAGATACACAGAGGAGCAAAGAAAAGCAGTGAAGTACATCCAGGACAACTATGGAAAAGAGGCCTCAGACTTCACTATGGTATTATTCACTGGTGCTGATCAGCTGGATAACACAACAGTAGAGGAGTTTCTGAGGGAGAGTAAGGATCTTCAGGCACTAGTCAACAGCTGTGGAGGCAGATATCATGTCTTTAacaacagagagcagagagaccgtGCTCAGGTCAGAGAGCTGCTGAGGAAGATAGACAATATGGTGAAGTTGAACAGATACTACACCAATGAGGTGTATGAGAAGGCTCAGAAAGAGATCAGGAACAGTCAGTTGTTAGAGTTGGGTGTAGGAGTTGCCTGCACAGCTACAGCAGTAGGACTAGGTATCAAAGCCCCAAACAAGGTTTCCCTTATAGGGATAGGAGTAGCAACAGTTATAGGAGGAGAGATAGCACCGATTGTAACCAAGAAGAAGAACAATAATTAACTACAGGATAAGTGTCTGTAAATAAGCCCTGAAGGAACAACATGATTATTGCTATAATGATTTATCTTTGTAGGATTTATTATTGATGATATGGTTTAACATTTACCCAATTTTGGTTGTCACTGCATTTAACCAAATGACTAAATCATGCGTTAAAGTTATTAAGTTAATTGTAAGAGTTTTACTTTGCATAAAGGAAGAGACAGTACATTTGTTCAACATGGCTTCCATACCTGAAGCATCTCTGGTTGTAATGTAAAGTAATTGAATGTGCTGCTCgctaatcacatttatttattgtcTTTTGTTATGTCCTTTTAAACATGCTGTTAGGTAGTGATGGGCACTCATATGGAACATCTATATCGACGTCAGTTGTATTGTTTCTAACCTACCCAACCAGTTGTATTACAATATGAAGCTTGTTGATGGCCATCAGCAGGCAGCAGTAAGCTAAGTTGAGAGCCTGTGTAAGGGTGTTGTGCCTGTAGGAACAGTGATGTGTGGTCTTTTACATACAGTAATGTTAACAGCAACGATAAGGCCATATCAAGAAATGCCTTGTCATATTGATATCAAGTTATATCATATTGAATTATCGATATTGATGCCCACCATTTCTGTCCTTCTTTAcaaagttatttatttatttaaaaacttTGTAATACTTTTTAGATTATTTACAAAATAGAGAAATGTAATATTTAGTTGATTCATTGAAACTGCCCTTAATGTTGACCTGTATTGATTAaacacggggcggcagggtagcctagtggttagagcattggactagtaaccggaaggttgcgagttcaaacccccgagctgacaaggtacaaatctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1297681 lncRNA downstream 26040 5172449 ~ 5190371 (-) True G1138572
TU1297739 lncRNA downstream 69775 5146263 ~ 5146636 (-) True G1138620
TU1297738 lncRNA downstream 70261 5144597 ~ 5146150 (-) True G1138619
TU1297683 lncRNA downstream 82553 5133317 ~ 5133858 (-) True G1138574
TU1297675 lncRNA downstream 91587 5112352 ~ 5124824 (-) True G1138566
TU1297752 lncRNA upstream 5821 5250262 ~ 5251136 (-) True G1138632
TU1297680 lncRNA upstream 13656 5258097 ~ 5258533 (-) True G1138571
TU1297754 lncRNA upstream 28943 5273384 ~ 5273692 (-) True G1138634
TU1297757 lncRNA upstream 32608 5277049 ~ 5277273 (-) True G1138637
TU1297760 lncRNA upstream 42932 5287373 ~ 5287611 (-) True G1138640
XM_036939934.1 mRNA downstream 4902 5200479 ~ 5211509 (-) True LOC118938162
XM_036939933.1 mRNA downstream 38494 5168329 ~ 5177917 (-) True LOC118938161
XM_036939930.1 mRNA downstream 61311 5149240 ~ 5155100 (-) True LOC118938159
XM_021556506.2 mRNA downstream 74788 5138584 ~ 5141623 (-) True LOC110485440
XM_036939931.1 mRNA downstream 84947 5128229 ~ 5131464 (-) True LOC110485443
XM_036939937.1 mRNA upstream 1005 5245446 ~ 5266487 (-) True LOC110516762
XM_021556513.2 mRNA upstream 34505 5278946 ~ 5280863 (-) True LOC110485445
XM_036939955.1 mRNA upstream 340613 5585054 ~ 5595560 (-) False LOC110517601
XM_036939954.1 mRNA upstream 340708 5585149 ~ 5595559 (-) True LOC110517601
XM_036942604.1 mRNA upstream 382170 5626611 ~ 5629846 (-) True LOC110516670
TU1297677 other downstream 53457 5158165 ~ 5162954 (-) True G1138568
TU1297206 other downstream 596547 4619495 ~ 4619864 (-) False G1138232
TU1297095 other downstream 795151 4394745 ~ 4421260 (-) False G1138151
TU1296434 other downstream 1450595 3765282 ~ 3765816 (-) True G1137672
TU1296425 other downstream 1483111 3731621 ~ 3733300 (-) True G1137666
TU1299312 other upstream 427019 5671460 ~ 5672247 (-) True LOC118938515
TU1299433 other upstream 800416 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 847918 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 1361878 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 1379711 6624152 ~ 6628820 (-) False LOC110485426

Expression Profile