RNA id: XM_036942604.1


Basic Information

Item Value
RNA id XM_036942604.1
length 1735
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110516670
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5626611 ~ 5629846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctcatttctttacccattctctctctcccctttctctctctctctcttgtttcccACCGTACTGCTCCGCTTGCGCAAAGCGAAAGCAGCAGCGGAAAGTCTCAGGCAGCTCCTGCTCTGTTCACGCATCACTTCACAACGTGTCAGCAacggagaggggaaggaggagacgaGAGAGTGAGGGGGCGAGGGAAACCCGAACCCATGACTTCCGCGTAttttcctctctctggtctcgcATCTCAAGCCACCCAGAGTGGTATAAAAATACCTGGGATATGCTGCTTCATTTCAAACTCGGAGCAGGAACTTAATAGTACATATGCAGCCCAATCCAGTTCGATTTGGATATTAAAGAATTTACCGGTAAACCGAAGTCATAACGTGGTTAGCAAACGTCCGAAGAAGGATTTGACATGTTTTGGGGTCCTCTTGTTTTCTTGCAGTGGACAGTTCTTCTGGCCCGGTTCTTCTGACCGACTCGTAAAACGGATAATTCTGTAGAGCTTCTGGGATCGACACACTCACCCACTCCAGTTTTCTTCTGGAACTCTGTGTGATCACCGGGAACCCGAGATGGATGTGGAATCTCAGAGGAGCGCACGCCCCCGCGGACGGTGCCTGGACGTTTTCTTGGTCGGTTCTGTCGTTTTGCTCTTCCTGGCGGTGGCGACAGTTGTTGTCATGGGAACTTTGGCTCTTGTGGAGCTACGGTCAGAGATCGGGGTTCAACCTTATGTTGTGGATATGCAAGGTACATCGGAGACGCACCATGGCGTGCCCCGTCCCAAGCCCGCGTACAAGAAGCAGAGCTTGGCCTACGTGCAGCTCACCTCCGCCACGATAGAGAACAGCACAATGTCCTGGTCCCAGGTCGACCATGGACAGGAGTCCTCTGTTGGAGATCTGTACGAATACAACCTTCAGCAACATACATTACAAACCAAGCAGGATGGCTTCTACTTCCTGTACCTGGACCTCCAGCTCACCTGTACCGCCAAATGTGGGCGGGGCATCCTCGTCGTCCAGCTTGCAAGTCACGGCGACCCAAAGCTCACCTGCCAGGTGGAGCTCCCAGAGTGGTCAGAGTCAAACCCTGTGACAACGGTAACCAGGAAGTGCTGGAAGGTGACACGACTGGACTCAAAGAGCCGGTTGATAGGCCATATGGTGGTGCCGAAAGCGCAGGACACGTTCTGGAAACTGGACGGGAACGGATCCGGAATGGGAGTTTTCTTAGTGGCTTGATGTGGGCCACGTTCAGTACGGTCAACTTTGTGAAACTTTGCAGATAGAGATGCCGTGAACAGAGCCGACGTTATTCCTTCGTTAAGATGTCAGGGAGGCATGAAGTTCTACATTGCTACTATCTGAACATTCCCGAAACGTTGCGTCCTACTGAACGCACCCCTGGGATGGAAGTTAGGGCTCCGCCACAGACGAAGGGAAGGAGACGAGAAAAGGAAGCGAGCCAAGGGTACTGAGATGCACCCCATCTAGGAGAACTTGCAGACAGAGAGAGTCGTCCCACCATACACTGTTTGTGGACTTTGACCTCTGTCGCTCAGGGCATCTCCATGGAAACAATTTAAACTAAACAATTCAGGTCTATTTATAtgaatatttattgaatgtatatatatttaatgtataaacgtgtatttatatatttgtacTCAGGGTTACAATGTGTTGTTTATTGTCATTTGTAGATGCCACTACGTTGGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299357 lncRNA downstream 2288 5624122 ~ 5624323 (-) True G1139785
TU1299337 lncRNA downstream 39147 5586559 ~ 5587464 (-) True G1139768
TU1299333 lncRNA downstream 70600 5555447 ~ 5556011 (-) True G1139764
TU1299325 lncRNA downstream 87986 5538072 ~ 5538625 (-) True G1139756
TU1299290 lncRNA downstream 103812 5518703 ~ 5522799 (-) False G1139726
TU1299363 lncRNA upstream 13899 5643745 ~ 5643960 (-) True G1139790
TU1299364 lncRNA upstream 14897 5644743 ~ 5645043 (-) True G1139791
TU1299341 lncRNA upstream 30410 5660256 ~ 5661215 (-) True G1139770
TU1299371 lncRNA upstream 31558 5661404 ~ 5664528 (-) False G1139797
TU1299372 lncRNA upstream 31558 5661404 ~ 5664528 (-) True G1139797
XM_036939955.1 mRNA downstream 31051 5585054 ~ 5595560 (-) False LOC110517601
XM_036939954.1 mRNA downstream 31052 5585149 ~ 5595559 (-) True LOC110517601
XM_021556513.2 mRNA downstream 345748 5278946 ~ 5280863 (-) True LOC110485445
XM_036939937.1 mRNA downstream 360124 5245446 ~ 5266487 (-) True LOC110516762
XM_036939938.1 mRNA downstream 382170 5216411 ~ 5244441 (-) False LOC118936520
XM_036942560.1 mRNA upstream 41591 5671437 ~ 5678473 (-) False LOC118938515
XM_036939965.1 mRNA upstream 49318 5679164 ~ 5755819 (-) False LOC110487505
XM_036939963.1 mRNA upstream 126887 5756733 ~ 5770774 (-) False LOC110485432
XM_036939964.1 mRNA upstream 126887 5756733 ~ 5783388 (-) False LOC110485432
XM_036939960.1 mRNA upstream 126887 5756733 ~ 5783389 (-) False LOC110485432
TU1297653 other downstream 364098 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 369088 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 382207 5217691 ~ 5244404 (-) True LOC118936520
TU1297677 other downstream 463657 5158165 ~ 5162954 (-) True G1138568
TU1297206 other downstream 1006747 4619495 ~ 4619864 (-) False G1138232
TU1299312 other upstream 41614 5671460 ~ 5672247 (-) True LOC118938515
TU1299433 other upstream 415011 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 462513 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 976473 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 994306 6624152 ~ 6628820 (-) False LOC110485426

Expression Profile