RNA id: XM_036939965.1


Basic Information

Item Value
RNA id XM_036939965.1
length 4622
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC110487505
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5679164 ~ 5756340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTTTTAAATAATAACTTTGTGTCATAGACTACAATTAGAGCCTATACTGTCTGATTACCACTATGCCAATGTGAAATTGTAGATTTGTTGGTTTGATtcaaataagagagagagagagagagagagagagagagagagagcgggagagagagcgagcgagcgagacagagctaGACGAGGCCGCGTTTAACGGAAATCGGTGCCATTGAGAAACAGTGCGTACGTTACTTTCCGCTATCACGCTAGGGTATTAACGATTCCATACATTCGATCGTCGGTCATATCAACTCTATTCGGTCGTGAGGTTTATGGAGCATCACGGACGATCAGGTCTAGATTATTTAAATGCTCTGGATAATATCTATCCGTGTGTAATCTTGGAGCCCTCCGCATTCCAGTCTAGGGAGAGGAAGGATGCTGTAGCCTACCAAGCTATGCGCTACTGAAGTGTTTTACATTGGCCAATAGCCCAGCCTCATCAGTGCGACTGCATTTTGACTGGACTCGACGATAcatcatataatataatatgacttCCATTTGCTATGTGTTATATCTGTACGTTTGTATTTGTCATCCAACTGGACTAGCCTGTAGAATAGGCTACAGTCATCGCCATAGGAACCCGAGGGAGATATCATTATAATAAGCTACTTTAGTGCAACGTGACGTGCAACAGCGGGAAAGACGGTCGAGTCCTATTAGGTGAGATTGAGCGTATGTGTGACGCTAAAGTGGCGTGTGTTTCCTCATGTGGAGTGTTTTTCGTCGAGGAGGATACGCTCGCGTTGTCGGATAATTCCCACGTCGAGGATCGGTTGACTCCCTTCTTTATTCcatctcgctctcacacacaccgtGCGCGTGGCCTCGCCCGGGAGCAACCGGGTCGCCTATTACACGGGCTTATTTTTACTGCATCggcaagaaggagagggagagagaaccgaGGATAAAACAACGGGAGGGAAGGATTGGGGGAccggaggagagaagaggagaggcggGATGAAGGAGGAGACGCAGTGAacgacagaggaggaggagggagactcgaGCGTTCGAGgCTCTCCTGACGTGCCTGGTGGTATCGCGTCCTGACTCTCCCCCCAGTCATGGCTCTGTCACTGTGGTTCCTGTTTGTGTCTGTCACCACCCTAACTCACGTTGCCCCCTCTGGCCAAGCTATGTCCAGAGCTGCGATTCCCTTCGGCATCCTGAGGAGGGAGCTAGCGTGTGAGGGCTACCCTATCGAGCTGCGCTGTCCAgGAAGTGACGTCATAATGATTGAGACAGCAAACTACGGACGCACGGACGATAAGATCTGTGACGCGGACCAATTTCAGATGGAGAACACACAGTGTTACCTCCCAGACGCACTCAAGATCATGGCCcagaggtgTAACAACAGGACCCAGTGTGTAGTGATAGCAGGAGTAGATGTGTTTCCAGACCCCTGTCCTGGTACATACAAATACCTGGAGATACAGTATGAATGTGTTCCTTAcaTAGAAGTGGACCAAAAAGtcTTTGTGTGTCCTGGTTCTCTCCTGAGCGTTCAACCGGCTACTTCCTTATTGGAGGCGGAGCATCAATCTGGGGCGTGGTGTAAGGACCCGTTGCAGGCTGCTGATAGGCTGTATGTCATGCCCTGGACACCCTATAGGACGGAAGTTCTGTATGAGTATGCTTCATGGGACGACTACAGGCAGAACAGAGTCACCACCACTTACAAGCTGCCGAACCGCGTCGACGGTACAGGCTTCGTGGTCTATGATGGAGCCGTGTTCTACAACAAGGAACGCACGCGCAACCTGGTCAAGTACGACCTCCGCACGCGCATTAagaGCGGCGAGGCGGTGGTGTTGAACGCTAACTACCACGACACTTCTCCGTATCGGTGGGGCGGGAAGAGCGATATCGACCTCGCTGTGGATGAGAACGGACTGTGGGTCATCTACTCAACTGAAGCCAACAATGGACGTATAGTTGTCAgtcagGTAAACCCTTACACCCTGCGTTTCGAGGGCACGTGGGCGACCAGCTTCGACAAGCGCGGGGCGAGCAACGCCTTCATGGCGTGCGGCGTGCTGTACGCGGTGCGCTCCGTCTTCCAAGACGacgagggacagacagacagaggaggaggaggtggaggggataTGGTGTTATATGCGTTTGACACCAGTAGAGGGCGAGAGGTGCCGGTCCAGATCCCCTTCCCTAACCCCTACCAGTATATATCATCTATAGACTACAACCCACGGGACAACCAGCTGTATGTGTGGAATAACTACTACGTGCTGAGATACCCTCTGCAGTTCAGACCGCCCCAGCCTACCAAAGGTGTGTGTGCCCGGGGGAAgggcagggtgtgtgtggggggcagtTTGCTAACCATAATGATAATATATTTGACCCCTCCCTCCCCATGCCTCTCTCCTCCAGGTCCTCTCTCATCTCTAATGACTACAGTGGGGTCCTACACAGCCACCGTAGCACTGACCCCAGTACGACCTTCAGCCTCCAATCCCATCGGGGTCATCAACCGGAGTCCGGACTTGCGGCCAATCACGGCCATGGTCccgctgaccccccaccccccccaccgtGCCCCCATCGCCCCGGGGGGGTCCTACGGGAGGCAGGTTGGGGTGTGTGAGGGGAGGGTGACCAGAGGGGTACAGTGGCCCCCTACACCTAaaggagagatggtagagagaccATGTCCCAAAGGATcactggGTATTGCATCGTACCAGTGTGTGTTGTCCCCGATAACCTGGAACACCAGAGGGCCTGACCTCAGTAACTGTACCTCCCCCTGGGTCAGTCAGATAGCACAGaagATAAAGAGTGGGGAGAATGCAGCTAACATCGCTGGTGAGTTAGTAAACCTGACGAGGGGGCGGGTCTACGCCGGTGATGTCAGCATGTCAGTCAAACTTCTAGAGCAGCTGTTGGACATCCTGGATTCTCAGCTTCAGGCCCTACGACCAGCCAACAAGGAGTCTGCTGCACGCAACTacaacaagTTGCAGAAGAGGGAACGCACCTGTAGAGCTTATGTCCAGGCGGTGGTTCAGGTAGTTGATAACCTGTTGGGCCCTGAAGCTCTAGTCTCCTGGGCTGATATGAGGACCACTGACCAATCACGCTCTGCCTCGCTGCTATTGGACGCCATGGAGAAAGGAGCCTTTCTATTGGCTAACAACATCTACGAGGGGCGATTCAGCGACAGAGCGCCCAATGTCGatctaGAGGTGTATGTATTGAACACAGAGGCAGATCTACAGGACCTGACGTTCCCTCACTCCTATGACAGTGACAGTGTTCTACAGCTCTCAACTGCTACTCTACAGCAGTACAGCAGCAatggtcaggtgaagatAGTTCTATCTCTGTATAAGAACCTTGGATCCTTCCTGACCACTAACAACTCCTCGTTGAGGTTGGAGGCGGGGTTTGTGATTGGCGGTGGCAGGAGGTTGGCAGTGAATTCTCACGTGATCTCGGCTTCTGTCAACAAAGGTTCCAACCGAGTATTCCTCTCTGAACCGGTCGTCTTCACTCTGCGACACCTACAGGTGGAGAACCACTTCAGCCCCAACTGTTCGTTCTGGAACTCCACGGGGTCGGGGGGGTCAGCATCGGGGTCGTCGGGGGGTCGTTGGTCGTCCCAGGGGTGTAAACGGATACacaccaacaacacacacaccacctgcgCCTGTAACCATCTGTCAACCTACGCTGTCCTGATGACCTACCaccaacctgcttctgtACATGGTATACAGGAGGTTCTGGTCTACGTAGTGTCCTGGGTAGGTATATCCGTAGCCCTGGTGTGCCTTGCAGCCTGCAGTACCTTACTGTGCTGCCAGGGGGCGCCACAGTCGGACCACAGCACCATACACAGGAATCTGTGGGGCAACCTCTTCATCACCGAACTCATCTTCCTCATTGGGGTGGATAAGACACAGTACAGCgTAGCGTGTCCAGTCTTTGCCGGTCTGCTCCATTTCTCCCTgctctctgtgttctgttggtTATGCCTGGAGGCAGTGGAACTCTACTTACTGCAGGGGGAGCTCTTTGAAGGACGGACCTCTAGGAGGAAGTACTTCTATCTCTGCGGCTACTTCCTGCCAGGGGTGGTCGTGGCCGTCTCCGCCGCCATCGACTACAGGGGCTACGGCACCCGGACCGTgtgttggCTGCAGATGGACAACTACTTCATCTGGAGTTTCCTGGGTCCTGTATCTGTCATTATAATgCTGAACCTGGTTGTCTTGGTGATGACTCTTCACAAGATGGTGCACAGCTCCTCCGCCCTCAAACCCGACTCCAGTCGTCACGACAACCTCAGaGCGTGGACTGTGGGTTCgctcaccctcctcttcctcctggtgGTGACCTGGTCTCTGGGGCTCgtcttcctctcatctccctctctcctcctctcctacctcttctcctcccttaACACGGCCCAGGCTCTGCTCATCACAATACTGTTCTGTACACTCACTAGGAAGGTAGGTGGGGTCTCAATACTGCCTCTACACTCACTAGGAAGGTAGGTGGGTTCTCAATACTGTTCTGTACACTCACTAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299314 lncRNA downstream 7878 5669870 ~ 5671286 (-) True G1139746
TU1299316 lncRNA downstream 9803 5669084 ~ 5669361 (-) True G1139748
TU1299304 lncRNA downstream 10319 5668002 ~ 5668845 (-) True G1139736
TU1299308 lncRNA downstream 11430 5667319 ~ 5667734 (-) True G1139740
TU1299373 lncRNA downstream 13823 5665016 ~ 5665341 (-) True G1139798
TU1299403 lncRNA upstream 11418 5767237 ~ 5767977 (-) True G1139823
TU1299410 lncRNA upstream 46836 5802655 ~ 5802866 (-) True G1139829
TU1299423 lncRNA upstream 67221 5823040 ~ 5824694 (-) False G1139840
TU1299425 lncRNA upstream 67221 5823040 ~ 5824694 (-) True G1139840
TU1299444 lncRNA upstream 127446 5883265 ~ 5961963 (-) False G1139846
XM_036942560.1 mRNA downstream 691 5671437 ~ 5678473 (-) False LOC118938515
XM_036942604.1 mRNA downstream 49318 5626611 ~ 5629846 (-) True LOC110516670
XM_036939955.1 mRNA downstream 83604 5585054 ~ 5595560 (-) False LOC110517601
XM_036939954.1 mRNA downstream 83605 5585149 ~ 5595559 (-) True LOC110517601
XM_021556513.2 mRNA downstream 398301 5278946 ~ 5280863 (-) True LOC110485445
XM_036939963.1 mRNA upstream 914 5756733 ~ 5770774 (-) False LOC110485432
XM_036939964.1 mRNA upstream 914 5756733 ~ 5783388 (-) False LOC110485432
XM_036939960.1 mRNA upstream 914 5756733 ~ 5783389 (-) False LOC110485432
XM_036939961.1 mRNA upstream 914 5756733 ~ 5783389 (-) False LOC110485432
XM_036939962.1 mRNA upstream 914 5756733 ~ 5783389 (-) True LOC110485432
TU1299312 other downstream 6917 5671460 ~ 5672247 (-) True LOC118938515
TU1297653 other downstream 416651 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 421641 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 434760 5217691 ~ 5244404 (-) True LOC118936520
TU1297677 other downstream 516210 5158165 ~ 5162954 (-) True G1138568
TU1299433 other upstream 289038 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 336540 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 850500 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 868333 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 873182 6629001 ~ 6649127 (-) True LOC110485426

Expression Profile