RNA id: XM_036939966.1


Basic Information

Item Value
RNA id XM_036939966.1
length 6164
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC110519495
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5828400 ~ 6076863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacagagagaaagggggaagagtgTGAACAAGAGAGAGACGAGGCGTTCTCTaacagaaagaggtagaggagaggagagcaaaaTAGTTGTTTTCTATCTCCGTGTGGCTCACACTGAGAGTTGTCTCACCAAAAGAGAGggaatattgtatttatttttattctgtTCATGTTATCACCACTGATCATACAGAATAAACACCTTGTTAAACTGGGGTTTTCTTCAATCTGAACTCAACAGTAAAACAGATTTCATCTCAGACTGATTCTTCTTGTGGGACTAGTTTTATTAGGATCCTACTAGTTGTCTGGTGTGGATATACTACCAGTCTGTCTCTGAGATGGGGTCCAGAACTATTCTACTTGTTCTGGGTCTTAATTTCACTCTTCTGGGGAACCTAGAGGCCAGAGTTTGCGGCCTGGGTTTCATAGCCAAAGGTAGTCACCAATGTCATGATATAGATGAGTGTAAAGAGTTGGACAGTACCCCACCCTGTGGAAGTAATGCCACATGTTACAACACACGGGGAAGCTTCTTCTGTCAGTGTCAACCTGGGTTCAGATCCACAACGCCTGTCAACTCCACTGCTCTCACTGGGGAGTGTAATGACGTGGATGAGTGTAAGGAGCAGACTGCTGATTGCCCCAACAACTCATCCTGTGTGAACACCCCAGGGTCCTACACCTGCAACTGCCAGTCTGGGTACAAACTAACAGAGAGCAGGTGTGAGGacATAGATGAGTGTAATGTAACTGCTGGTATCTGTGAAGGGGGAGGGACCTGTCAGAACCAGGAAGGAAGCTACATTTGCCTCTGTCTCCCTGGATACAGTAATCATGGCAACAAACAGGCTAGGTGCTCAGacatagATGAGTGTAATGCAACTGCTGGTATCTGTGGAGGGGGAGGGACCTGTCAGAACCAGCAAGGAAGCTACAGTTGCCTCTGTGTACCTGGATACAGTAATCATGGCAACAAACAGGCTAGGTGCTCAGacatagATGAGTGTAATGTAACTGCTGGTGTTTGTGGAGAGGGAGGGACCTGTCAGAACCAGGAAGGAAGATACAGTTGCCTCTGTCTCCCTGGATACAGTAATTATGGCAACAAACAGGCTAGGTGCTCAGACGTGGATGAGTGTAAGGAGCAGACTGCTGATTGCCCCAACAACTCATCCTGTGTGAACACCCCAGGGTCCTACACCTGCAACTGCCAGTCTGGGTACAAACTAACAGAGAGCAGGTGTGAGGacATAGATGAGTGTAATGTAACTGCTGGTATCTGTGAAGGGGGAGGGACCTGTCAGAACCAGGAAGGAAGCTACATTTGCCTCTGTCTCCCTGGATACAGTAATCATGGCAACAAACAGGCTAGGTGCTCAGACATGGATGAGTGTAAGGAGCAGACTGCTGATTGCCCCAACAACTCATCCTGTGTGAACACCCCAGGGTCCTACACCTGCATCTGCCAGTCTGGGTACAAACTAACAGAGAGCAGGTGTGAGGacatagATGAGTGTAATGCAACTGCTGGTATCTGTGGAGAGGGAGGGACCTGTCAGAACCAGGCAGGAAGCTACAGTTGCCTCTGTCTCCCTGGATACAGTAATCATGGCAACAAACAGGCGAGGTGCTCAGTACTGACATGTGACCAGTTTAAAGGGGATGAGACTCCTGGACAGaatgTCCCAGGTTTAGCTGGTCTCCTGTCTCTGATGAGGAACAGCTGTCTGGCATTAAGTAACTCTGGAGGGAGACTGACTGGAGATGGGTTACTGGAgAATGTCTTCACGCAGATAGACAGTATCCTGTCTCAAGGTATCCTAAGCAACAGCCGTGAGGTGAGTAGGTTCCTCGGCGCTGTGGAGGACGCCATGAAGCTCATAGCGCCGCAGCTCAGAGACAACCACACCACCATGGAAACAgaccacacagAGGCTGAGATTGCAGTGAGGAGGGGACAGACTCCGCCCATTGGGCCAATCAGCCTGGCCAATGACAACGCTCGACTGGACACCAGCTGGGAGACAGCCACTGGCAACGGGACGTACCCAGGTTTGACTCTGGCTGGGTTGGTGTGTTACAAGACAGTGGAGAGATATGTCAACAACTCCTTCCAGTACCTcactgagacagacacagacacagacacagacacagacacggcGTCAAAGCCTAACTACCAGATCAGTTCCAAGGTGGTAACAGCTTTTGTCAGTAACCCAGCAACAGACCAACTCACCAAGCCTGTCATCCTCACCTTCAAACATCTACAGGTGAGGGCAGAGTCATCAGAAATGAACTATACCTGTGTGTTCTGGCGTGTCCATGAAAAGGACGGGGCGTGGTCAAGTCGTGGCTGTACCAAAGTCACATCTAACGCTACATACACCGTGTGTTCCTGTTCCCACCTTAGCAGCTTTGCTGTTCTCATGGCCCTCTACCCTgtaaagGATACATTTGAGCTGCGTCTGTTGACGTGGCTGGGTCTGTCggtgtctgtggtgtgtctgtTGCTGTGCATCCTGACATTCTGGCTGTGTCGGTCCATCCAGGGGACACGCACCACCATCCACCTCCACCTCTGTGTCTGCCTCTTCATCGCTGACCTCGTCTTCCTCAGCggaatctctcacacacagagcaaGggaGGATGTAGGGTTGTAGCAGGTCTCCTCCACCTGTTCTTCCTAGGATCCTTCAGTTGGATGTTGTTAGAGGGGGTTCAGCTCTACCTCATGGTGGTCCTGGTCTTCAACACTACCATAAGACCTCTGTACCTGTATGCTGTGGGATATGGACTGCCACTGGCTATAGTCATCATCTCTGCTATCACCTACCCAGATGGATACGGTACCACACAACACTGTTGGTTGTCTCTGGAGAGAGGATTCATCTGGAGTTTCTTCGGCCCAGTGTGCACCATCATCTTCCTCAACGCTTTCATCTTCATCATCACTGTCTGGAGGCTGGCCCAGAAGTTCTCTAGTCTCAACCCTGACCTCTCCAACCTACACAAGATCAaggtgttcACAGTGACAGCAGTGGCCCAGCTGTGTGTGTTGGGTACTATGTGGATATTTGGAGTGTTCCAGTTCCAAGAGGATGGGACAGTGGTCATGACATATCTCTTCACTATCCTCAACTCTCTACAGGGAGCACTGCTGTTCATCATGCACTGCCTACTGAACAAAacgGTTAGAGAGGAGTATTGCCAGCTGCTGTCCTGTATCTgcacaccacagaagaagagatACTCAGATTTCAGCACTAACAACCCTTCCTCCAGCCAATCCCAGGGGTCAAGGCGTACCCAGAACACAGGGGAGTTGCAGACATGATGACATCACCAATCCCCCATAATGCACGTCTTTACTCCCCCTCCCTTTTCAGGCCTGGTTCAGTAGAAAATGTGCCCTACGAGCCCGGCTGCTTAGTAAAAATGTGCCCTATCTAGAACCTTAACAGGTTCTTCGACTGTCCCGGTAGGAGAACTCTTtcaataaccctttttggttccaggtagaaaccttttttGGATTCCATCTAGTTGCCTCTCCAAaaagttctacctgaaaccaaaaaggtgCCTCTATGCGGACAGCAGAAAAACCCCTTAGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCCTTAGGAACCCCCTTGTCTAAGTGTGTACTAGCCCAGCTGGTCAGCAGAAAAACCCCTTTAGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCTTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCCTTAGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCTTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCCTTAGGAACCCCCTTGTCTAAGTGTGTACTAGCCCAGCTGGTCAGCAGAAAAACCCCTTTAGGAACCCCCTTGTCTAAGTGTGTACTAGCCCAGCTGGTCAGCAGAAAAACCCTTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCTTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCCCAGCTGGTCAGCAGAAAAACCCCTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCCCAGCTGGTCAGCAGAAAAACCCTTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCTTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCCCAGCTGGTCAGCAGAAAAACCCCTTTAGGAACCCCCTTGTCTAAGTGTGTACTAGCACAGCTGGTCAGCAGAAAAACCCCTTAAGGGAACCCCCTTGTCTAAGTGTGTACTAGCCCAGCTGGTCAGCAGAAAATGTGTCTTAAATGTGTCTTAGCCCCAGTGATCAGTGCTCGGAATCCTTAAATTCCTCCTCTGATTAGACACTTCATATCAAACTTGATGTTAACCACTGTCTTATCAAGCATTAGGTTATCCAATCAGAAGTTAAATGATCTTCATGCCATCCAATAGGAATCCATATGATCTTTGTCATCCAATAGGACTCCATATTCTCTTTATGTCTTCCAATAGGATAAGGGGGAGTAGGAAGTGACAATGATGCAATGATGTCACAGTAGTTTCATTTTCACCGACGTaacatttacatttcagtcattaaGCAGATGTTCATATGCAGAGCATCTTACAGACAGAAAAGAAAGAAGGACCATATGGTGTTTATGTCATCCAATCAGAAGATATATGATCTTCCCGTCATCCAATAGGAATCCATATGATCTTCATGTCATCCAATAGGAATCCATATGATCTTAATGTCATCCAATCAGAAGTTATATCCTCTTTATGTCATTTTTACAGCCACAAAAGATCAGTACTATTTTACTGATCTTTTATAAACgcttacaaacatatattttttttatagttCATAAATTGTTTGTTATAATGCTTATTCGTTATAGTTATTATGAAGTGTTACCAGAGTATGAGAGGATGGCTGGTGGGTGCTCCAGAAGGGGATGAGAGGATGGCTGGTGGTCCAGAAGGGGATGAGAGGATGGCTGGTGGTCCAGAAGGGGATGAGAGGATGGCTGGTGGTCCGGAAGGGGATGAGAGGATGGCTGGTGGTCCGGAAGGGGATGAGAGGATggctggtgggtggtgggtggtgggtggtccAGAAGGGGACTAGTTGAATCATTTAGAATTTTTCAAACACCTCAAAaagctttttcctgcaatctagagccaaaACCATTAcgtttaattctatgtaaaatatatatatatatgtatttctgCATGTCTAAGTGTATCTCTTGAGATGTCTGTACCCTCCTGACTGGTGGTTATTCTTTTTAAGAAAATAAAATGCTTTTCTGCATCTCTTTTTAAAATCTGGCTAAAATATTCAATGGAATATGAGTCTTATTCATTACATTTAGTTATTGCTGGCTTTTTTTGCCAGCAAGCATGTCAGCTAAGATAGTTACCAAACTGGATAAGcccctgtgtcccctatgggcatgatgcctctgacctctgacctctatgcATATAATGAGATAAGAGTCTTATGAGATAAGAGTCTTTGAGTAGAACATGGCTTCATCAATCACACTGCTTTTGTCCAAAAACAACGTTTATCGACAGGTTTTTTCAGAAATCCCAGTTGAAAGATTCCCGGAATCAGGAggaaataagcaggaaatccggaaTTCTCCAATCGGGATTTTGGGGAAAACCTGGTCATTTGTTTGAAAGGTTAAAGATAATGTGATACCCTACGGGCATTTTCCTGGACACAGGAAGGTTTGTTTACTTCTGACCAACTGAACCCGGGTCCAGCAACTGTGAACCCAACACCTTAGTTGTTACGCCAAGAGCTCCCAACCAAGTTCAACATCAGAacacaaaatataagcttgtgTTACTCCATTGTTTGTAGACAATGTCACATGGTTAAAAAAACATCATTTTGAGCTCACGGGTGTTCTTGCATCCACAGCTCAGTCTATTGTTTGAAAGTGGTCACATCCCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299423 lncRNA downstream 3706 5823040 ~ 5824694 (-) False G1139840
TU1299425 lncRNA downstream 3706 5823040 ~ 5824694 (-) True G1139840
TU1299410 lncRNA downstream 25534 5802655 ~ 5802866 (-) True G1139829
TU1299403 lncRNA downstream 60423 5767237 ~ 5767977 (-) True G1139823
TU1299305 lncRNA downstream 72060 5755818 ~ 5756340 (-) True LOC110487505
TU1299438 lncRNA upstream 47986 6047264 ~ 6048940 (-) True LOC110512654
TU1299521 lncRNA upstream 57588 6056866 ~ 6101418 (-) False G1139905
TU1299522 lncRNA upstream 57588 6056866 ~ 6101324 (-) False G1139905
TU1299523 lncRNA upstream 57588 6056866 ~ 6057381 (-) False G1139905
TU1299524 lncRNA upstream 57588 6056866 ~ 6101324 (-) True G1139905
XM_036939994.1 mRNA downstream 29126 5794309 ~ 5799274 (-) True nxnl1
XM_036939960.1 mRNA downstream 45011 5756733 ~ 5783389 (-) False LOC110485432
XM_036939961.1 mRNA downstream 45011 5756733 ~ 5783389 (-) False LOC110485432
XM_036939962.1 mRNA downstream 45011 5756733 ~ 5783389 (-) True LOC110485432
XM_036939964.1 mRNA downstream 45012 5756733 ~ 5783388 (-) False LOC110485432
XM_036939991.1 mRNA upstream 13881 6013159 ~ 6033506 (-) False LOC110516892
XM_036939992.1 mRNA upstream 17294 6016572 ~ 6033368 (-) False LOC110516892
XM_036939993.1 mRNA upstream 25713 6024991 ~ 6033505 (-) True LOC110516892
XR_005035420.1 mRNA upstream 35080 6034358 ~ 6122793 (-) False LOC110512397
XM_036939988.1 mRNA upstream 46518 6045796 ~ 6058622 (-) False LOC110512654
TU1299312 other downstream 156153 5671460 ~ 5672247 (-) True LOC118938515
TU1297653 other downstream 565887 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 570877 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 583996 5217691 ~ 5244404 (-) True LOC118936520
TU1297677 other downstream 665446 5158165 ~ 5162954 (-) True G1138568
TU1299433 other upstream 45579 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 93081 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 607041 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 624874 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 629723 6629001 ~ 6649127 (-) True LOC110485426

Expression Profile