RNA id: XR_005035421.1


Basic Information

Item Value
RNA id XR_005035421.1
length 4973
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC110512397
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6034358 ~ 6132682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aAAATAGTAGTTTTTCCAACCACGAGGCGACACAGAGAGTTGTCTCGCCAAAGGAGAGGGAAAATGTCATTGTCTTTTTCTCCTGTTCATGTTCTCACCACTTATCATACGGAATAAAAACCTTGTTAAACTGGGATTTTCTTCAATCTGAATTCAGTAAAACAGATTCAATCTCAGACTGATTCTTCTTGTGGGACTAGTTTTATTAGGATCCTACTGGTTGTCTGGTGTGGATATAATACCAGTCTGTCTCTGAGATGGGGTCCAGAACTCTTCTACTTGTTCTGGGTCTTCATTTCACTCTACTGGGGAACATAGAGGCCAGAGATTGCGGCCTGGGCTTCATTGCCAAAGGGAGTCAACAATGTGTTGATATGGATGAGTGTAAACAGTGGGACAGTACCCCAACCTGTGGAAGTAATGCCACATGTTACAACACATATGGAAGCTTCTACTGTCAGTGTCAACATGGGTTCAGATCCACAACATCTTTGAAGTTTACTCCTTTCGCTGGGGAGTGTAAGGATCTCAATGAGTGCCTGGAGAACCCACCGGTTTGTGGCAGCAACACCATTTGCCTCAACACCATCGGGAGCTACAACTGCCAATGTCAACCTGGGTTCAGAGTTCCTACTTACGCTGAACACTGTGCAGacATAGATGAGTGTAATGAGACCGCTGGTATCTGTGGAGTGGGCGGGGACTGCCAGAACCAGAAAGGAAGCTACAGTTGCCTCTGTCACCCTGGATACAGTAACTACGACAACAAACAGGCTCAGTGCTCAGTACTGACCTGTGACCAGTTCAAAGCGAATGAGACTCCTGGACAGactgtcccAGGTTTAGCTGGTCTCCTGTCTCTGATGAGGAACAGCTGTCTGGCATTAAGTAACTCTGGGGACGCAGCCGGAGGGAGACTGACTGGAGAGGTGTTACTGGAGAATGTCTTCACGGAGATGGACGGCCTCTTGTCTCACGCTATCCTAAACAACAGCCGGGAGGTGAGTGGGTTGCTAGGCACCGTGGAGGACGCCATGAGGTTCATCGGGCCGCAGCTCAGGGACACCCACACCACCATGGAGACAgaccacacagCAACTGAGCTTGCAGTGAGGAGGGGACAGACTCCGCCCACTGGGCCAATCAGCCTGGCCAATGACAACGCTCGGCTGGACACCAGCTGGGAGACAGCCACCGGCAACGGGACATACCCAGGTTTCGCTCTGGCTGGGTTGGTGTCTTACAAGAAAGTGGAGAAATCTGTCAACAACTCCTTCCAGTACctcactgacacagacacagacacagcaaccGCCACAGCATCAAAGCCTAGCTACCAGATCAGTTCCAAGGTGGTAACAGCCTTTGTCAGTAACCCAGCAACAGACCACCTCACCCAGCCTGTCATCCTCACCTTCAAACATCTACAGGTGAGGGCGGAGTCAATGGAGATGAACTACACCTGTGTGTTCTGGTCGGAGGGGCGTGTCCATGAAGAGGGAGGGGCGTGGTCAAGGAGTGGCTGTACCAAAGTCACGTCTAACGCTACACACACCGTGTGTTCCTGTTCCCACCTTAGCAGCTTTGCTGTTCTCATGGCCCTCTACCctgtacagaacacCTTTGAGCTGCGTCTGTTGACGTGGCTGGGTCTGTCGttgtctgtggtgtgtctgtTGCTGTGCATCCTGACATTCTGGCTGTGTCGGTCCATCCAGGGGACACGCACCACCATCCACCTCCACCTCTGTGTCTGCCTCTTCATCGCTGACCTCGTCTTCCTCAGCggtatctcacacacacagagcaagggagGATGTAGGGTTGTAGCAGGTCTCCTCCACCTGTTCTTCCTAGGATCCTTCAGTTGGATGTTGTTAGAGGGGGTTCAGCTCTATCGCATGGTGGTCCTGGTCTTCAACACTACCATAAGACCTCTGTACCTGTATACTGTGGGATATGGACTGCCACTGGCTATAGTCATCATCTCTGCTATCACCTACCCAGATGGATATGGTACCACACAACAcTGTTGGTTGTCTCTGGAGAGAGGATTCATCTGGAGTTTCTTCGGCCCAGTGtgcaccatcatcatcctcaatGCTTTCTTCTTCATCATCACTGTCTGGAGGCTGGCCCAGAAGTTCTCTAGTCTCAACCCTGACCTCTCCAACCTACGCAAGATcaaggtgttcACAGTGACAGCAGTGGCCCAGCTGTGTGTGTTGGGTACTATGTGGATATTTGGAGTGTTCCAGTTCCAAGAGGAGGGGACAGTGGTCATGACATATCTCTTCACTATCCTCAACTCTCTACAGGGAGCACTGCTGTTCATCATGCACTGCCTACTGAACAAAacgGTTAGAGAGGAGTATTGCAAGCTGCTGTCCTGTATCTgcacaccacagaagaagagatACTCAGAGGTCAGCACCACCAACCCTTCTTCCAGCCAATCCCagGGGTCAAGGAGCGCAGAGAACACGGGGGAGTCGCAGATATGACGTCACCAAACCCCCATAATGCACCTCTTTACCCCTCCTCCCATGACAAAGGTTCCCACTAGATGGCCAAACTGTAAAGTCAAAATGGTCGATATCGTaaacatttatgaaaacaaaGATTTGCGTTTAGCGATGTGGTTAAGATATATTGTAGAAATGGGAAGTGTTTCTGATTTAGGATCTTGGCCAGATAGTGACACACCAGAAACACTCATCCCGAGgatagtactgttcagaccaggttCGTAGAAAATGTGTCCAACTAGCCCGCCGGATAGTAAAAATGGTAGTCCTCTAGCCAGGTTGGCCAGTGCCCAAAATCCTTCAGTTCCATCCCTGATTAGACACTTCATATCAAACTTGATGTTAACCACTGTCTTCTTAACAAGCATTAGGTTATCCAATCAGAAGGTATGTGATCTTCATGTCATCCAATAGGAATGAGTATGATCTTTATGTCATCCAATTAGAAGTTCCATGATCTTCATGTCATCCAATAGGAATCCATATGGTCTTTATGTCATCCAATCAGAAGTTACACGATCTTCATGTCATCCAATAGGAATCTATATGATATTTATGTCATCCAATCAGAAGTTACACGATCTTCATGTCATCCAATAGGAATCTATATGATATTTATGTCATCCAATAGGAATCTATATGATATTTATGTCATCCAATAGGAATCTATATGATATTTATGTCATCCAATTTCACAACCACAAACGAAAGGTACTATTTTCCACCACTTGGATGACATCATAAACATGATGAACAGAAGCTTTCGTCCTTCACATGAATGTGATTTATAGTCATATTTATTACCAAGAGCACCAGATAGGGTGACTGTTCTACACGATTAAATCCAGAGAGATTTAGAAAAACATTATGTGAAGATTTGTGTTAGTTGTGATCTATTGGACTGTTAttctgttatactgttatactgttatactgttaatGTGTTATTGATCTTTAACCCTTTATTAATAACATTTAAGAATAAGTCTTTATAAATGAATATACATGTTTATAAATTATTATAAATGTTGTACATTTTTTATGAATGGAAGGCTGGTAATATTTACACATTCttataaatgtttacaaatataATTGTAAATCGTTTATAAATCGTTAAAAGGTTTATTCACGATAGTTATTTTAAAGTGCTACCATTGACACCTCTATGTATATAATGAGATAATATAAGATTTTTTGCGAACACTTGCAGTGCTTCTGTCCAAAAACAGCATTTATCAACAGGATTTCAGAAATCCCAGTGGTAAGATttccagaatcaggagggaaaaAACCTGGGTAAAGCAACTGTTAACCTAACAAATTAGCCTGTTAAAACCAAACAAATTAGCCTGTTAAAACCTAACAAATTAGCCTGTTAAAACCAAACAAATGATCCTGTTAAAACCTAACAAATTAGCCTGTTAAAACCTAACAAATTAGCCTGTTAAAACCTAACAAATTAGCCGCTATGTCAAGAGATCCGAACAGCTTGACGAGGTTGCTAGGTGTTTGGTTAAAGTGATTTCAATAGTTGTATAGGTTTAGGAGTAAAGTAGTAACAATGTACTGTACAGTTCTGCCATTGTAGAGGtccttaggcacagatctaggaccagaaCACAGTAAATTACTGTACAGTTCTGCCATTGTAGAGGtccttaggcacagatctaggaccagaaCACAGTAAATGTCCTGTACAGTTCAGTAGAGGTTGtccttaggcacagatctaggatcagcttacccaaCCCAAAACCTAACTTAAAGGGCTAtccaggattggtacatccagtttttttttacttttaaattaTTGATTTATTGCTCTTGGTTCTTGTAGAATATAACTTAAAACTGCCTTGTGACCAGGTCAACAGTCGTTCCCCATCAGTACCCTAACTATAAGCTTGTTTTCACTCCATTGTTTGTCCACATTGTAAAGGTTTAAAACATGGTTGAAAGTATCATGttgatctcatggatggtcagtccttgcatccagagATCCATCTGTGATGTTGAGAGTGGTTAAATTtatccaggcccatccctcagctgttaacCACAACAAGTGGTGGGATGACCTGTTAGTTGCTTTTTAAATCCAAGACTGCCCCTTTAAGGTTCCACCCTAGAACTTGGTCTCAGAATAACCATGGAGATTCAGTAGAGTCTTAAAACAATCTAAACAACGTCTACATTCaatgttgtatgttttatattctattctgttgcaCTTTTACAAGTTGTGTATTTTATACTTTTAAAGAATGTACCATTTTCATGTCCTTTATCAACACCGTTCTGAATGTAAGCACTTAGTGTTGTACTTGACTGTGTACtctgtagtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgagagatagagagtgggtATGTTTCGGTAGATTCAGCCACAATAAAACGTTGCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299530 lncRNA downstream 7433 6068363 ~ 6072303 (-) True G1139911
TU1299523 lncRNA downstream 22355 6056866 ~ 6057381 (-) False G1139905
TU1299438 lncRNA downstream 30796 6047264 ~ 6048940 (-) True LOC110512654
TU1299495 lncRNA downstream 60570 5969817 ~ 6019166 (-) True G1139888
TU1299494 lncRNA downstream 61999 5968713 ~ 6017737 (-) True G1139887
TU1299510 lncRNA upstream 6237 6129030 ~ 6131208 (-) True G1139898
TU1299315 lncRNA upstream 28794 6151587 ~ 6234823 (-) True G1139747
TU1299613 lncRNA upstream 165778 6288571 ~ 6302416 (-) True G1139981
TU1299627 lncRNA upstream 193878 6316671 ~ 6317016 (-) True G1139994
TU1299643 lncRNA upstream 200734 6323527 ~ 6323756 (-) True G1140000
XM_036939967.1 mRNA downstream 2873 5828400 ~ 6076863 (-) False LOC110519495
XM_036939988.1 mRNA downstream 21114 6045796 ~ 6058622 (-) False LOC110512654
XR_005035423.1 mRNA downstream 21114 6045797 ~ 6058622 (-) False LOC110512654
XM_036939991.1 mRNA downstream 46230 6013159 ~ 6033506 (-) False LOC110516892
XM_036939993.1 mRNA downstream 46231 6024991 ~ 6033505 (-) True LOC110516892
XM_036939989.1 mRNA upstream 29404 6152197 ~ 6167475 (-) True LOC110512959
XR_005035424.1 mRNA upstream 51051 6173844 ~ 6177005 (-) True LOC118938167
XM_036942561.1 mRNA upstream 65265 6188058 ~ 6191695 (-) True LOC118938516
XM_036939958.1 mRNA upstream 81178 6203971 ~ 6244613 (-) False LOC118938166
XM_036939959.1 mRNA upstream 85344 6208137 ~ 6244613 (-) True LOC118938166
TU1299433 other downstream 30796 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 407489 5671460 ~ 5672247 (-) True LOC118938515
TU1297653 other downstream 817223 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 822213 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 835332 5217691 ~ 5244404 (-) True LOC118936520
TU1299683 other upstream 483526 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 501359 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 506208 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 575589 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 656455 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile