RNA id: XR_005035423.1


Basic Information

Item Value
RNA id XR_005035423.1
length 3312
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110512654
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6044857 ~ 6058622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttgatgTGCAGGTGGGATTGTGTTCTTTTGTTGTGTAGGTGTGATTGTGTCCTGTCGTGTTATGTTCTGTTGTGTTGCACTGTGTCGTGTTGATCCAGGTGTGATGGTTGTGTGTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGAGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGCTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGtcgtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGAGTagtgtctgtccctgtgtgaTGGTTGTGTTTTGTAATATGTATGTGCTGAGTAGTGTTGATCCAGGTGTGATGGTTGTGTTTTGTAATATGTATGTGCTGTGTAGTGTTGATCCAGGTGTGATGGCTGTGTTTTGTAATATGTATGTGCTGTGTAGTATCGATCCAGGTGTgatggtattgtgttgtgtttccTTCAGTACTGACCTGTGACCAGGTCAAAGCGGATCAGACTCCTGGACAGACTGTCCCAGGTTTAGCTGATCTCCTGTCTCTGATGAGGAAAAGCTGTCTGGCGTTAAGTAACTCTGGGGAAGCAGCCGGAGGGAGACTGACTGGAGAGGTGTTACTGgagAATGTCTTGACAGAGATAGACAGTCTCCTGTCTCAAGGTATCCTAAGCAACAACCGGGAGGTGAGTGGGTTGCTAGGCGCCGTGGAGGACACCTTGATGCTCATCGGGCCACAGCTCAGAGACACCCACACCACCATGGAAACAgaccacacagCTACTGAGCTTGCAGTGAGGAGGGGACAGACTCCGCCCATTGGGCCAATCAGCCTGGCCAATGACAACGTGCGACTGGACACCAGCTGGGAGACAGCCACTGGCAACGGGACGTACCCAGGTTTCACTCTGGCTGGGTTGGTGTGTTACAAGACAGTGGAGAGCTCTGTCAACAACTCCTTCCAGTACCTCACTGACACGGACACAAACAGATACACAGCAACCGCCACAGCATCAAAGCCTAGCTACCAGATCAGTTCCAAGGTGGTAACAGCTCTCGTCAGTAACCCAGCAACAGAACACCTCACCCAGCCTGTCATCCTCACCTTCAGACATCTTCAGGTGAGGGCGGAGTCAGCGAGGATGAACTATACCTGTGTGTTCTGGTCGGAGGGGCGTGTCCATGAAGAGGGAGGGGCGTGGTCAAGGAGTGGCTGTACCAAAGTCACGTCTAACGCTACACACACCGTGTGTTCCTGTTCCCACCTTAGCAGCTTTGCTGTTCTCATGGCCCTCTACCctgtacagaacacCTTTGAGCTGCGTCTGTTGACGTGGCTGGGTCTGTCGttgtctgtggtgtgtctgtTGCTGTGCATCCTGACCTTCTGGCTGTGTCGGTCCATCCAGGAGACACGCACCACCATCCACCTCCACCTCTGTGTCTGCCTCTTCATCGCTGACCTCGTCTTCCTCACCggaatctctcacacacagagcaaGggaGGATGTAGGGTTGTAGCAGGTCTCCTCCACCTGTTCTTCCTAGGATCCTTCAGTTGGATGTTGTTAGAGGGGGTTCAGCTCTACCTCATGGTGGTCCTGGTCTTCAACACTACCATAAGACCTCTGTACCTGCATGCTGTGGGATATGGACTGCCACTGGCTATAGTCATCATCTCTGCTATCACCTACCCAGATGGATACGGTACCACACAACACTGTTGGTTGTCTCTGGAGAGAGGATTCATCTGGAGTTTCTTCGGCCCAGTGtgcaccatcatcatcctcaacACTTTCTTCTTCATCATCACTGTCTGGAGGCTGGCCCAGAAGTTCTCTAGTCTCAACCCTGACCTCTCCAACCTACGCAAGATcaaggtgttcACAGTGACAGCAGTGGCCCAGCTGTGTGTGTTGGGTACTATGTGGATATTTGGAGTGTTCCAGTTCCAAGAGGAGGGGACAGTGGTCATGACATATCTCTTCACTATCCTCAACTCTCTACAGGGAGCACTGCTGTTCATCATGCACTGCCTACTGAACAAAacgGTGAGAGAGGAGTATGGCAAGCTCCTGTCCTGTATCTGCACACCACTGAAGAAGAGATACACAGAGGTCAGCACTACTAACCCTTCTTCCAACCAatcccagGGGTCAAGGAGCGCAGAGAACACGGGGGAGTCGCAGATATGACGTCACCAAACCCCCATAATGCACCTCTTTACCCCTCCTCCCATGACAAAGGTTCCCACTAGATGGCCAAACTGTAAAGTCAAAATGGTCGATATCGTaaacatttatgaaaacaaaTATTTGCGTTTAGCGGTGTGGTTAAGATATATTGTAGAAATGGGAAGTGTTTCTGATTTAGGATCTTGGCCAGATAGTGACACACCAGAAACACTCATCCCGAGgatagtactgttcagaccaggttAGTAGAAAATGTGTCCAACTAGCCCGCCGGATAGTAAAAATGGAAGTCCACTAGCCAGGTTGGCCAGTACCCAAAATCCTTCAGTTCCATCCCTGATTAGACACTTCATATCAAACTTGATGTTAATTAACCACTGTCTAATCAAGCATTAGGTTATCCAATCAGAAGTTATGTGATCTTCATGTCATCCAATAGGAATCCATATGGTCTTTATTTCATCCAATCAGAAGTTACATGATCTTCATGTCATCCAATAGCAATGCATGTCCTCTTTATGTAatttttacagacacaaaagaTCGGTTCAATTTTACACAACTTCGTCGAATAGACAGATGAAGCCATACTTATAAACAGAAGCTTTCTTCCTTTACATGAATGTGATagatttatagtaatatttattacCAAGAGCACAAGATAGTGTGACTGTTCTACACAAATAAATCCAAAGGGATTTAGAAAAACATTAAGTGAAGATTTGTGTTAGTTGTGACCTATTGGACTGTTAtacttgtcatgtattgtcatgttgtgtctttctgtcctttcctttcaccctgtctccctctgctggtcgtattaggttaccttttctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299495 lncRNA downstream 26631 5969817 ~ 6019166 (-) True G1139888
TU1299494 lncRNA downstream 28060 5968713 ~ 6017737 (-) True G1139887
TU1299443 lncRNA downstream 32077 5961387 ~ 6013720 (-) True G1139846
TU1299498 lncRNA downstream 49731 5995241 ~ 5996066 (-) False G1139890
TU1299499 lncRNA downstream 49731 5995718 ~ 5996066 (-) True G1139890
TU1299530 lncRNA upstream 9741 6068363 ~ 6072303 (-) True G1139911
TU1299446 lncRNA upstream 21276 6079898 ~ 6081250 (-) False LOC110512397
TU1299447 lncRNA upstream 21276 6079898 ~ 6081250 (-) False LOC110512397
TU1299440 lncRNA upstream 22783 6081405 ~ 6082867 (-) True LOC110512397
TU1299532 lncRNA upstream 24862 6083484 ~ 6083868 (-) False G1139913
XM_036939991.1 mRNA downstream 12291 6013159 ~ 6033506 (-) False LOC110516892
XM_036939993.1 mRNA downstream 12292 6024991 ~ 6033505 (-) True LOC110516892
XM_036939992.1 mRNA downstream 12429 6016572 ~ 6033368 (-) False LOC110516892
XM_036939968.1 mRNA downstream 46518 5828400 ~ 5999279 (-) False LOC110519495
XM_036939966.1 mRNA downstream 46519 5828400 ~ 5999278 (-) False LOC110519495
XR_005035421.1 mRNA upstream 21114 6079736 ~ 6122793 (-) False LOC110512397
XM_036939980.1 mRNA upstream 21115 6079737 ~ 6122793 (-) False LOC110512397
XR_005035419.1 mRNA upstream 21115 6079737 ~ 6122793 (-) False LOC110512397
XM_036939981.1 mRNA upstream 21115 6079737 ~ 6132682 (-) False LOC110512397
XM_036939989.1 mRNA upstream 93575 6152197 ~ 6167475 (-) True LOC110512959
TU1299312 other downstream 373550 5671460 ~ 5672247 (-) True LOC118938515
TU1297653 other downstream 783284 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 788274 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 801393 5217691 ~ 5244404 (-) True LOC118936520
TU1297677 other downstream 882843 5158165 ~ 5162954 (-) True G1138568
TU1299538 other upstream 33737 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 547697 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 565530 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 570379 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 639760 6698382 ~ 6708978 (-) False LOC118938170

Expression Profile