RNA id: XM_036942561.1


Basic Information

Item Value
RNA id XM_036942561.1
length 1768
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC118938516
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6188058 ~ 6191695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTACTGGTTGCCAACCGTCGTTTTAACCTCATCGAAGAAGAAGGATGGGCTGGACGGTTGGAAACAAGCTACAAGTAAAGCCAATGATAgtaatacacatacagtgcattctgaaagtattcccGACCCCTTTgaatttttccatattttgttacgttacagccttattctaacagaAACACACATCATAATTAACGTCACTGGATTCTCTGCTTATGGCATCGTCCATGAAGAAGATGCTCCCATCTCCCCTATCCAGGGGCTTGTGTTGATATTCTACCAACCGTTTGTCCCTGAACAGAGGTCCATCCTGAATGTGTTGTTGCTTCCCAGTAATGTTGTGAGAAAAGAGGTGCGGGAGGTGATTGAAAGGGATGGAATTAGAGAAATTCAAACAACTTCTCAGTGTAAACTAACCCCGAAGCAAGAATACACCCTCTCCACTTATTCTGCAGATGGACATCGAATAGAACCAAAAGAAGCAGTGTTTGTGAAATGTGATTCCTATGAAAACAACTACTTTCAGTTGTTCTTACAAACTATAGTTAAAGAAGTTGATCTGCTTCTGAAAGAAAAGGAAGGTGATGAACTTGTATGGAACAGACTTGTCTGGCTGCCAGCCTCACCAACGGATGTCCCCTCTACAGTTTCAGCTGTTTCCCCTGCAGCCCCTACTGCCAACCCCTCTACCCCCCCTGGCAGAGCCTTCATCAGAAGAAACAGGATGTCTCTAGAGACTCGCCTGGGGCTCTTACAGCCCATATTCCTGCGTCTCCAGGATCGTGGGGTTCTGATTGATGAGGGAGGAGGTGGTCAGTAAATCCACCAAGACCCTACAGAACCAAGCCCTGCTGGACATGGTGGTAAAGAAGGGGGCTCGCGCCCAGGAACACTTCTACCAGGTCCTGAAGGAAGTAGATCCCTGCCTGGTCGAATACCTGGAAGAGCAGACAGTCTGAGAGGTAACCATGGATACAACCTCAGAAGATATCAAAACATTTAGAGACAGATCAGCACTTTGAGGAGCTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACAAGATCAGGGCTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACAGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACAAGATCATGACTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTACAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTATAGACTACaagatcaggactactgtctacCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTATAGACAACAAGATGATTTAATTTCTATCTGGAACATGGTGAATGTTGAATCATCTTGGACAGGTCTCGGACAACAACATGTGAGACTTAACATCTGACTTGTACTGGACAGCTGTACTGGCTGAACACCAGAtctagatacagtggggagaacaagtatttgatacactgccgattttcctacttacaaagcatgtagaggtctgtaatttttatcataggtacacttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299510 lncRNA downstream 56850 6129030 ~ 6131208 (-) True G1139898
TU1299533 lncRNA downstream 102953 6083484 ~ 6085105 (-) True G1139913
TU1299532 lncRNA downstream 104190 6083484 ~ 6083868 (-) False G1139913
TU1299440 lncRNA downstream 105191 6081405 ~ 6082867 (-) True LOC110512397
TU1299447 lncRNA downstream 106808 6079898 ~ 6081250 (-) False LOC110512397
TU1299613 lncRNA upstream 96876 6288571 ~ 6302416 (-) True G1139981
TU1299627 lncRNA upstream 124976 6316671 ~ 6317016 (-) True G1139994
TU1299643 lncRNA upstream 131832 6323527 ~ 6323756 (-) True G1140000
TU1299666 lncRNA upstream 184120 6375815 ~ 6376564 (-) True G1140021
TU1299669 lncRNA upstream 191949 6383644 ~ 6383868 (-) True G1140024
XR_005035424.1 mRNA downstream 11053 6173844 ~ 6177005 (-) True LOC118938167
XM_036939989.1 mRNA downstream 20583 6152197 ~ 6167475 (-) True LOC110512959
XM_036939981.1 mRNA downstream 55376 6079737 ~ 6132682 (-) False LOC110512397
XR_005035421.1 mRNA downstream 65265 6079736 ~ 6122793 (-) False LOC110512397
XM_036939958.1 mRNA upstream 12276 6203971 ~ 6244613 (-) False LOC118938166
XM_036939959.1 mRNA upstream 16442 6208137 ~ 6244613 (-) True LOC118938166
XM_036939984.1 mRNA upstream 57215 6248910 ~ 6279488 (-) False LOC110519908
XM_036939982.1 mRNA upstream 57215 6248910 ~ 6306407 (-) False LOC110519908
XM_036939983.1 mRNA upstream 57215 6248910 ~ 6306407 (-) True LOC110519908
TU1299538 other downstream 94542 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 139118 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 515811 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 930535 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 414624 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 432457 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 437306 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 506687 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 587553 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile