RNA id: XM_036939958.1


Basic Information

Item Value
RNA id XM_036939958.1
length 4765
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC118938166
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6203971 ~ 6244613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGAACCGGATATGTAAATGAATTAAAAAACGAAAGTAATTTTGGAGAACGGGATGATCGAACTGTTTCTGTTGAGCGAGAGATACAAGGTCTCCTAGATCAAGACTCTGTAGAGACAAAGAGATGGGGAGCAACTGCACCAAAAGGaccagagaagaggagagcactCACTCTGTCTCAAGGcggggagaagaggggagcacTCACCCTGTCTTACGTCCGATATATAGCTCTGAGAGCTATTACAGCGCTTATGGATCTGCACAATTTGAAGACGACCTGATGGGGAGAGAACCAATATTCGGATCCGCCCACCGTTTTGAGGATGTTGAGACAGAGAAGATATGTGAGGAAACCGTGGATGACATCACACAGATAGTTAAAGGGAAACTGAAAGCCAGTCTGAAGAAGAAGTTTAGATGTGTATTTGAAGGCACTGCTGAGGAACAAAATGGACTTGATAGCatttacacacagctctacatCACACAAGAAGAGGTTAATAAAGAACATGAGGTTCGACGGATTGAATATCCATCCAAGAGAAACATATCAGACACTCCAATAAACTGCAATGACATCTTCAAACCCTTacctggagaagagaagagacctaTCAGAACTGTAATGACAAAGGGAATCACTGGCATCGGAAAAACGATCTCTGTACATAAGTTCATCCTCGACTGGGTAGAAGGAAACGCCAATCAGGATGTTGATTTCATCTTTGTGCTTCCTTTCCGAGAACTGAATTTGATTAAAGATGAGCAGTACAGTCTTCATGGACTTCTGAATGACTTCCACCCTGAACTAACAGAGATAGTAGAAGCAAAGATTTATGCTACCTGcaaagttctgttcatctttgatggtctggatgaaAGCCAACTGCCATTAGGTTTTGAAAAACACAAGAGGGTGACTGATGCTACACAGACATCATCGGTGGATGTGCTGCTGACAAACCTCATTGAGGGGAATCTACTCCCTGAAGCTCTCCTCTGGATAACCTCCCGACCAGCAGCAGCCAATCAGGTCCCCTGTAAGTACATTGACAAGGTGACAGAAGTACGAGGGTTCAACGACAAACAGAAAGAAGAATACTTTAAGAAGAATGTTGAGGATGAGAACCGGGCCAGGAGAATCATCTCCCACATTAATacatcaaggagcctccacatcatgtgccacataCCAGTCTTCTGTTGGATTACTGCCAGGGTTCTTGAGCAAATGTTGAGTGAAGATGAGAGTGGAGAGATCACAactctgactgagatgtacaATCACTTCCTGCTCATTCAGACAAACCTGAAAAGCAATAAGTATGATGGGGAAAGGGAGACGGATCTGGACATCATCATAGAAAGAAACAAAGAAATAATTCTCAAACTGGCACAACTTGCATTTGAACAGCTGGTGAAGGGCAATCTCATATTCTCTAAGAAAGACCTGGAGGAGTGTGGCATTGATGTCAGTGAAGCCTCAGTGTACTCTGGGTTTTGCACAGAAATCCTGAAAGAAGAGTATGGGCTGTATCGGAAGAAAGTGTACTGCTTTGTCCACCTGAGCTTCCAGGAGTTCCTTGCTGCTCTGTACGTGTTCCACTGCTGTGCGAGCAAGAACATCAAGGCCCTGGAGTCGTTCGTTGGGGATGTGTCATCAGAGCTGTCCTTGCATGAGCTGCTGAAGATGATGGTAGATAAAGCCTTGGAGAGTGAGAATGGACACCTGGACCTGTTCCTCCGTTTCCTTGTTGGCATCTCAACAGAATCCAACCAGAAACTGTTACAAGACCTACTGCCACAAACAGAGATCAGCTCAGAGACTGTTAAGGAAATTAAGAAATACCTCAGGAAGCCAAATGTAGATCAAGTCTCACCTGATAGGTACATCAATCTACTCATCTGCTTGACTGAGATGAAAGATGATTCAGTACATGAGGACATTGACAAGTTCCTAAAGTCTGGACTACCTGCAGAAATAGAAATGTCCCCCGGTGACTGCTCAGCTCTGGCCTATGCGCTGCTGATATCAAAGGGCGTGCTGGATGAACTTGACCTACAGAGATACAACACATCTAAGGAGGGGCGTTTGAGACTAATCCCAGCAGTGAGGAGTTGCAGAGAGGCAATACTTGCTGGCTGTGAACTCACTGAGTGGTTTTATAAAGCATTGGCCTCAGTTCTCAGCTCAAATGACTCTTACCTGAGAAAGCTGGACCTGAGTAAtaatgacctgaaggattcaggagtgaaggtgctctctgctggactggggaatccaCACTGTGAACTAGAGACACTGAGGATGTCATTCTGtagagtcacagaggaaggctgtgcttctctggcttCAGCTCTGGAGTcaaacccctcccatctgagAGAACTGGACCTGAGCTtcaatcacccaggagactctggagtgaagctgctctctgctagactggaggatccacactgtagactggagaaactcaatGTGGACCATAATGAAGAGTTCTGGGTTAAACCACAGCTGATGAAGAAATATGCCTGtgatctcacactggacccaaacacagcacacagaaacctctctctgtctgaggggaACAGAAGGGTGGAGAGGGTTAAAGAGGAGCAGCCGTATCCTGATCATCCAGAGAGATTTGATCACTATACCCAGGTgttgtgtagagagggtctgactgggcgctgttactgggaggtagagtgCAGTGGGCTGGCTGACATTGGAGTGACATGTAAAGGCATCAGTAGAAAAGGAGATGGTTCTGCCAGTGAATTTGGATACAATAAGAAGTCCTGGAGTCTGATCTGCCGTGGGAATCATTACGGTGCCCTCCACAATAGTCAATATACTACAATACATGCTCCACACCTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctccacgcTTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctccacgcCTCATCAACCCTCCTCAACCCCAGAGAGAccagtcctcctcccctcctcaaccCCAGAGAGAccagtcctcctcccctcctcaaccCCAGAGAGAccagtcctcctcccctccacgcctcagagtaggagtgtttCTGGACTGGCTGACCGGCACTCTGTCGTTCTACAAGGTCTACTCTGGCTTGATGACCCACCTGCACACATTCCAGACCAtattcactgagcccctctatcccaCTTTTGGGCTTCAGCATCCTCACACCTCTGTGTCCCCCGGGTTTGCCAGCAATCCTGTATCATCTGAGGCCACCCGCTGTCCAGATGAGATCCTGATAATGACAGAAATATGCATAAGGGAAGAAGAAGGAAAagaggaagatgatgatgaagaagaatACAACAGAGAAGTGGATTTTCTTCTCCTGGAATACAGTGATCCAACCTTGTCAAAACAGAAAGGATCATCCATTCCCTTGCCATGCTCTCACAGTTGGCCTTTTTCTAGTGAGGGGACATTGGAAGAGGAGAGCGAGGACGGTGTCAGAGGTCATCTTTCTAACAGCTTACCTGATGCAATGGAGAATTTAACCATCACAGAGATTAGAAGAGTCAACCAGGGCCTGTTTACTACTGACCCTCCCATGATGGTTTCCAATACCTTTGAACCAGAAATCTATAATCATGAGGGCAAGGGAGCATACCGGTTCCAGTGCCCCAGTGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGTtcaggatggagggagaaggagaggtgctCTATAGGACAGTCCACTGGGACAGGAAGCTTCTATCCCAGAGTGGAAAGAGGCCTGCAGGACCCCTGTTCAACATCGACTGTCCTCAGAAGTCTGTCTGTCAACTACACCTCCCACACTGTCAAATTCATTCTTGTGGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACATCATTGAGTTTCTCCCCCCCCATgagacaacagacacacatgTCATAATAAACATCACTGGATTATCTGCCTATGGTGATGTCACAGATGATGATGCTCCCATCTCCCCCATACTTGCACATGTGTTGTTATTCTACCAACCACTTGGCAAGAGGTCCATCCTGAATGTGTTGTTGCTTCCCAGTAATGTTGTGAGAAAAGAGGTGCGGGAGTTGATtgaaagggatggaataagagaAATTCTTACAACGTCTCTGTGTACACTTACCCCAAAGCAAGAATACACCCTCTCCACTAACCCTGCAGATGCACATCCAATACAACCAAACCCAGCAAAATTTGTGGATTCCTATGAAAACTACGTCCCCACATTTCAGTTGTTTATTAAACCTGTTGTTGAAGAAGTGAATCTTCTTCTGGAAGAAAATAAAGCTGAAAAACTTGTATGGAACGGACTTGTCTGGCTTCCAGTTACACCACCAGGTGGCGCTACAGCAGGGACAAAAAATGTTCATTTTCTGCTGCTTGACATTCTGGAAGAGCTGGGCCGAGGCGACCTGAAGAAATTTCAGTGGTACATTAATAAGGGTGTGGAGGAATTTCCTTCCATCTCAGAGGGCCAGCTGGAGGATGCTGACAGACTGTTCACAGTGGATAGGATGGTACAGAGCTACTGTGATGAGGGAGCTGTGAAGATCACACTGGAGATCCTGAGGAAGATGGGTCGGAACAACCTGGCTGAGGAGTTAAAGGAGAAGTTGACAAAACAGGTCTGAATGCCATAAACTATctacaatattaaagctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299510 lncRNA downstream 72763 6129030 ~ 6131208 (-) True G1139898
TU1299533 lncRNA downstream 118866 6083484 ~ 6085105 (-) True G1139913
TU1299532 lncRNA downstream 120103 6083484 ~ 6083868 (-) False G1139913
TU1299440 lncRNA downstream 121104 6081405 ~ 6082867 (-) True LOC110512397
TU1299447 lncRNA downstream 122721 6079898 ~ 6081250 (-) False LOC110512397
TU1299613 lncRNA upstream 43958 6288571 ~ 6302416 (-) True G1139981
TU1299627 lncRNA upstream 72058 6316671 ~ 6317016 (-) True G1139994
TU1299643 lncRNA upstream 78914 6323527 ~ 6323756 (-) True G1140000
TU1299666 lncRNA upstream 131202 6375815 ~ 6376564 (-) True G1140021
TU1299669 lncRNA upstream 139031 6383644 ~ 6383868 (-) True G1140024
XM_036942561.1 mRNA downstream 12276 6188058 ~ 6191695 (-) True LOC118938516
XR_005035424.1 mRNA downstream 26966 6173844 ~ 6177005 (-) True LOC118938167
XM_036939989.1 mRNA downstream 36496 6152197 ~ 6167475 (-) True LOC110512959
XM_036939981.1 mRNA downstream 71289 6079737 ~ 6132682 (-) False LOC110512397
XM_036939980.1 mRNA downstream 81178 6079737 ~ 6122793 (-) False LOC110512397
XM_036939984.1 mRNA upstream 4297 6248910 ~ 6279488 (-) False LOC110519908
XM_036939982.1 mRNA upstream 4297 6248910 ~ 6306407 (-) False LOC110519908
XM_036939983.1 mRNA upstream 4297 6248910 ~ 6306407 (-) True LOC110519908
XM_036940004.1 mRNA upstream 184509 6429122 ~ 6450055 (-) True LOC110485390
XM_036940009.1 mRNA upstream 225860 6470473 ~ 6500574 (-) False LOC110487211
TU1299538 other downstream 110455 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 155031 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 531724 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 946448 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 361706 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 379539 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 384388 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 453769 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 534635 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile